Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1148 ATGTCACAGCGTTCGACCCCAGCGCCGTTTTTGACGAAGACGTATTTGTTGGTGGACGACCCTGCCACCGACGACGTCATTTCGTGGAGCGAAACGGGAAACACTTTTGTCGTTTGGAAACACGCCGATTTCGCTAAGGATTTGCTTCCCAAATACTTCAAACACAATAATTTCTCCAGCTTCGTCCGCCAACTCAACACCTATGGGTTCCGAAAGATCGTTCCCGACAAATGGGAATTCGCCAACGAGTGTTTCAAGCGAGGGCAGAAGGAGCTCCTCACCGAGATCAAGCGGCGGAAGACGGTGATGCAATCTCCGGCAACCGGAAAATCCGGCGGAGGGAACATCTCAGCGTCACACTCCGGCGGCGACGACATGGGTTCGACGTCGACGGGGTCGGTGGAGGGTGCAACGACGACCCAGTGCGCGGATTTGACGGGCGAGAATGAAAAATTGAAGAAGGACAACGAGAAATTGAGCGGCGAGCTGGCGCGTGCGAAGAAGCAGTGCAACGAACTGGTGTCGTTTCTGAGGGAGTCACTGAACGTGTGCCCCGATGTGATAAACCGCATCATTCGGCAAGGAACGTGTGGGTCCAGCGAGGATGCGGTGCGTTTTGAATGTATCGGTGATGATGATGACGAAAATGCGGTAGGTGAGTACGAAGGCAACGGTGGAGAAAGTTTGAAACTGTTCGGTGTTTGGTTGAAGGGCGAAAATGGGCGCAAGAGAGGGCGGACACATGATAATATTAAGATCTAG 762 0.5315 MSQRSTPAPFLTKTYLLVDDPATDDVISWSETGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANECFKRGQKELLTEIKRRKTVMQSPATGKSGGGNISASHSGGDDMGSTSTGSVEGATTTQCADLTGENEKLKKDNEKLSGELARAKKQCNELVSFLRESLNVCPDVINRIIRQGTCGSSEDAVRFECIGDDDDENAVGEYEGNGGESLKLFGVWLKGENGRKRGRTHDNIKI* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1148 253 MobiDBLite consensus disorder prediction 101 136 - -
Vra7g1148 253 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 250 - -
Vra7g1148 253 Gene3D - 2 101 IPR036388 -
Vra7g1148 253 MobiDBLite consensus disorder prediction 104 136 - -
Vra7g1148 253 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g1148 253 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g1148 253 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 250 IPR027725 -
Vra7g1148 253 Coils Coil 142 169 - -
Vra7g1148 253 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
Vra7g1148 253 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g1148 253 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g1148 253 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vra7g1148 253 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1148 Vra-Chr7 27510116 27513202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1148 2 253 HSF AT4G36990 52.852 1.21e-81 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vra7g1148 HSF_DNA-bind 6.7e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1148 K09419 - gmx:100801897 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0588 11 4580279 4582479 Vra7g1148 7 27510116 27513202 PCT