Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1142 ATGACACAGAATCTAAGGTGGTGGATATCAAACGGGCTGGAAATGGTGGTTACTGATGAAAGGAACCGCGATCGTGCGAACAGGAGGGACGTGGTGGAGCTACCACAATATGATCAAGCTGTAACTGTAGCATATTATGAGGAGGAGTTGCATGCTGGCGTACCTCTATCTCACTTCTCCAGAATCTCTCCTTTAAACATGGATAAACAAAACAAGGTGGTGGAGAAGAAATACAAAATATTGAATAATAGTCCAACCAAGCAAGCAACTTCTGCTGAGGCTCAGAAGTTTTCAAGTTCCATGAAGGCTGCAGTAGAAGGAACATCCTCTCGTGGTGAGGTCATGTCATCTGCAGTTCTTCAAGCAGAGGAGGTCCAATCAAATTTGAGACCTGAATTTCCTAGTTTTGTGAAGTCGTTAGTTAGATCACATGTTGCTAGTTGTTTTTGGATGGGCCTTCCTGTGTCCTTCTGCAAAAGACACTTACCGGATAAGGATACAACAATCATTTTGGAAGATGAATCTGGTAAAGAATACAATACAAAATTCATTGCCTGTAAGACGGGATTGAGCGCTGGATGGAGACAGTTTTCTGCTGTGCACAAATTGCAGGAGGGTGATGCGGTGGTCTTCCAATTAGTTGAACCAACCAAATTTAAGGTTTATATAATAAGAGCTAATAATACGAGGGAACTGGATGGGGCCTTTCTGAATCTTGATAGCTGCACAAAACAACAAAAAATGGGAGGCAAAGATAACATGGATACTGATCTTACATGCAATAGCTCAAAGAGAAAACATGGTAAATCTGTCCCACTTGAAATCCAAAAGAAAAAAAAGGCAAACTTGTCGAGATTGAGACCTAAAGTTATGCCATCCGAAGAACAATCTGAAAATGATAGCGAGGAAGCTCTCTCAGAAATTATGGAGGAGTTTAGAATGCTTGAGTTTGAAGATGTCAGAGGCTTTGAAAATTTTAGCATCATAGTTGATGGAGCGTCAATAGATGCTGAGTTCCCTGACGATGTTAGAAACAAGTACTACAGGCTATGTTGTAGTCAGCATGCATTTCTTCATGAGAATCTCATCAAGGGAATGAACTATAAGCTGGTCGCTGGAATTATATCTGAAACTGTCAACATTGCCGATGCCATAAAGGTTAGTATGCTATGCACCCCACGTATGGAATATGTTAACTGGGACAAAATATTGCTATCCTTCGAGCATCTGGGTATGAATGTTGAGTTTCTAAGGATCCGATTACGCCGGCTTGTAAGCATTGCTTATGAGGAAAATGATGTCTCAGAGGCCAAAAAGTACTTGGCCTCTAGAAACGAGTACAGTCGGGCAGATGATGAAATAAGGAACATAGAAGAGAAGCTCCAAGAATTGAAAGGAGCATGTAATGGTTTTGGTGCTTATCTTGGGAGTTTGAAGGGCAAGGCTGAAAATTATCATAATAAATTTCGAAGAGAGGTCGATGCACCTTGGTGA 1494 0.4116 MTQNLRWWISNGLEMVVTDERNRDRANRRDVVELPQYDQAVTVAYYEEELHAGVPLSHFSRISPLNMDKQNKVVEKKYKILNNSPTKQATSAEAQKFSSSMKAAVEGTSSRGEVMSSAVLQAEEVQSNLRPEFPSFVKSLVRSHVASCFWMGLPVSFCKRHLPDKDTTIILEDESGKEYNTKFIACKTGLSAGWRQFSAVHKLQEGDAVVFQLVEPTKFKVYIIRANNTRELDGAFLNLDSCTKQQKMGGKDNMDTDLTCNSSKRKHGKSVPLEIQKKKKANLSRLRPKVMPSEEQSENDSEEALSEIMEEFRMLEFEDVRGFENFSIIVDGASIDAEFPDDVRNKYYRLCCSQHAFLHENLIKGMNYKLVAGIISETVNIADAIKVSMLCTPRMEYVNWDKILLSFEHLGMNVEFLRIRLRRLVSIAYEENDVSEAKKYLASRNEYSRADDEIRNIEEKLQELKGACNGFGAYLGSLKGKAENYHNKFRREVDAPW* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1142 497 Coils Coil 440 467 - -
Vra7g1142 497 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100-LIKE 69 429 - -
Vra7g1142 497 SMART B3_2 136 227 IPR003340 GO:0003677
Vra7g1142 497 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 69 429 IPR044837 -
Vra7g1142 497 SUPERFAMILY DNA-binding pseudobarrel domain 130 227 IPR015300 -
Vra7g1142 497 Pfam B3 DNA binding domain 136 226 IPR003340 GO:0003677
Vra7g1142 497 Gene3D - 115 229 IPR015300 -
Vra7g1142 497 ProSiteProfiles B3 DNA-binding domain profile. 136 227 IPR003340 GO:0003677
Vra7g1142 497 CDD B3_DNA 134 225 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1142 Vra-Chr7 27448720 27453102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1142 118 282 B3 DNA Binding Superfamily AT3G19184 39.412 2.79e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra7g1142 B3 1.2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1142 - - vra:106768002 983.4