Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1131 ATGGGTCTCTGTACTTCAAAGCCTCATGCAAATCCCACCCTCTCCTCTTCTCCCAATTCCAACACCCACTTCACAGACACCAATGCCGACCAACAATTACCGAAAAATCCTATTCCCACTCCAAAAAAATCTCCCCTTTTCCCGTTCTACACTCCGAGCCCGGCCCACCACTTTTTCTCCGGCAAGTCTCCGGCGCCACCGACTCCCCGGCGCTTCTTCAAGCCTCCCTCGCCAGCCAAGCACATTCGGGCCGTGCTGGCCCGTCGTCATGGGTCTGTTAAGCCCAACGAAGCTACCATCCCGGAAGATGAAGTGGTTGCTCTTGACAAGAACTTCGGATTCTCGAAACAGTTTGAACAAAAGTTTGAGGTTGGGGACGAGGTTGGACGAGGACACTTTGGTTATACTTGTGCTGCCAAGTTCATTAAGGGCCAACTCAGAGGCCAACACGTCGCCGTCAAGGTCATCCCTAAAGCCAAGATGACAACTGCAATTGCAATTGAGGATGTGAGGAGGGAGGTGAAGATATTGAGGGCTTTGACAGGACATAAAAATCTGATTCAGTTCCACGATGCGTATGAGGATAATGACAATGTCTACATAGTAATGGAGTTGTGCGAAGGAGGGGAGCTTTTGGACAGAATATTGTCGAGAGGAGGAAAATACACGGAGGACGATGCTAAAGCTGTCATGATACAAATACTAAATGTTGTTGCGTTTTGCCATCTACAGGGTGTTGTGCATCGTGATCTCAAACCAGAGAATTTCTTATTCACATCAAAAGAAGAGAACTCTGAGCTGAAGGCCATTGACTTTGGATTGTCGGATTTTGTCAAACCAGATGAAAGGCTTAATGACATTGTTGGTAGTGCATACTATGTGGCTCCTGAAGTTTTGCATAGAGCTTACAGTACAGAGGCTGATGTCTGGAGTGTTGGTGTGATTGCTTATATTTTACTATGTGGCAGTCGTCCATTTTGGGCACGGACTGAATCTGGGATATTCCGTGCCGTATTGAGAGCTACTCCAAGTTTTGATGAACCTCCATGGCCTTCTCTATCAGATGAGGCAAAGGATTTTGTTAAGAGACTTCTAAATAAAGATCCAAGGAAAAGAATGACTGCAGCGCAGGCATTGAGTCATCCATGGATTAAAAATTATAAGGACGTAAAAGTGCCTTTGGATATTCTAGTGTTCAAGCTCATGAAGACATACATGCGTTCCTCCTCTCTACGAAAAGCAGCTTTAAGAGCTTTGTCTAAGACATTGGCTACCGAAGAGCTGCAGCATTTGAAGGAGCAGTTTGCACTTTTAGAGCCAAACAAAACTAACACCATTAGCTTGGAAAATATCAAAGCGGCCTTAACGAAAAATGCAACAGATGCCATGAAGGAATCACGCATTCCAGATTTCCTGGCATCACTTAATGCATTGCAATATAGAAGGATGGCTTTTGATGAGTTCTGCGCAGCTGCACTCAGTGTTCATCAGCTTGAAGCACTTGACCGGTGGGACCAACATGCACGCTGTGCCTATGAACTTTTTGAAAAGGATGGAAACAGAGCTATAGTCATTGAGGAACTAGCTTCGGAGCTTGGGCTTGGTCCATCTGTACCTGTTCATGCTGTTCTTCACGACTGGATTAGGCACACTGATGGAAAGTTGAGCTTCCTTGGATTTGTTAAGTTATTGCATGGTCCATCTCGAAGTCTTGCAAAACCTCACTAG 1728 0.456 MGLCTSKPHANPTLSSSPNSNTHFTDTNADQQLPKNPIPTPKKSPLFPFYTPSPAHHFFSGKSPAPPTPRRFFKPPSPAKHIRAVLARRHGSVKPNEATIPEDEVVALDKNFGFSKQFEQKFEVGDEVGRGHFGYTCAAKFIKGQLRGQHVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLIQFHDAYEDNDNVYIVMELCEGGELLDRILSRGGKYTEDDAKAVMIQILNVVAFCHLQGVVHRDLKPENFLFTSKEENSELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRAYSTEADVWSVGVIAYILLCGSRPFWARTESGIFRAVLRATPSFDEPPWPSLSDEAKDFVKRLLNKDPRKRMTAAQALSHPWIKNYKDVKVPLDILVFKLMKTYMRSSSLRKAALRALSKTLATEELQHLKEQFALLEPNKTNTISLENIKAALTKNATDAMKESRIPDFLASLNALQYRRMAFDEFCAAALSVHQLEALDRWDQHARCAYELFEKDGNRAIVIEELASELGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLAKPH* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1131 575 SMART serkin_6 122 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1131 575 Gene3D - 402 563 - -
Vra7g1131 575 ProSitePatterns Protein kinases ATP-binding region signature. 128 154 IPR017441 GO:0005524
Vra7g1131 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 246 258 IPR008271 GO:0004672|GO:0006468
Vra7g1131 575 SUPERFAMILY EF-hand 412 566 IPR011992 -
Vra7g1131 575 Gene3D Phosphorylase Kinase; domain 1 115 210 - -
Vra7g1131 575 Pfam Protein kinase domain 122 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1131 575 MobiDBLite consensus disorder prediction 1 45 - -
Vra7g1131 575 Gene3D - 424 493 - -
Vra7g1131 575 ProSiteProfiles Protein kinase domain profile. 122 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1131 575 MobiDBLite consensus disorder prediction 8 37 - -
Vra7g1131 575 PANTHER SERINE/THREONINE-PROTEIN KINASE 34 570 - -
Vra7g1131 575 Gene3D Transferase(Phosphotransferase) domain 1 211 397 - -
Vra7g1131 575 CDD STKc_CAMK 121 383 - -
Vra7g1131 575 SUPERFAMILY Protein kinase-like (PK-like) 120 414 IPR011009 -
Vra7g1131 575 ProSiteProfiles EF-hand calcium-binding domain profile. 426 461 IPR002048 GO:0005509
Vra7g1131 575 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 34 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1131 Vra-Chr7 27211086 27215417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1131 1 575 EF-hand Containing Proteins AT3G50530 72.627 0.0 913
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vra7g1131 Pkinase 1.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1131 K00924 - gmx:100803313 1076.23