Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1125 ATGTCGTCGCTGAATTCGCCGTGCGCCGCGTGCAAGCTTCTGCGCCGGAAGTGCACGCAAGAGTGCGTGTTCGCGCCGTACTTTCCGCCGGACAACCCGCAACGGTTCGAGTGCGTGCACCGCGTGTTCGGCGCCAGCAACGTGTCGAAGCTGCTGAACGAGCTCAGCGTGGCGCAGCGCGACGACGCCGTTAAGTCGCTGGCGTATGAGGCGGAGACGCGATTGCATGACCCCGTGTATGGCTGTGTGGGAGTAATTTCGTTACTACAGCAACGGCTCCGCCAAATCCAGATGGAGCTTCAGAGCGCGAAGAAGGAATTGTCCACTTATGTGAGTCCTCAGACTATGCAGATTCTCTTGGCCAATCCTGGGATGGTGCCATCAGCTGATATTGTCGTGCCTCCTTCGCATCAACCTCTGTTCAATCATGTTGGCAACAACATGGCGCCGCAGCAGATTTTGGTTGGCCATGGCGGTGGCCAGACGGTGGTTCGCGATCCTCAACAGCAGGATTTTCAAGAAGCTCAGCAGATAGCTCTTGCAACTAGGGAGCAGCAACAGATGTTTAGAAACTACGAGCAGAAAGTGTTGGGTGGTTTTGAACCTAGTAATGGTGGATTTGGGGCCCAAGGAGAATTGTTGTCTCCTTTGGCTCTTGGAAATTTTGGTAATGTTGGCGCTTACCAAATGCAGCAGCTAGGGGAACAACATCTCATTGAGTCACAGTTGCTCCTCTCGCCACAGCAGGGACAGCCCCATCAGCAGCAACAGTGTGAAAGTGAGGATACAAAGAATGTGCTTGATTTTTCAATCAAGTAG 819 0.5348 MSSLNSPCAACKLLRRKCTQECVFAPYFPPDNPQRFECVHRVFGASNVSKLLNELSVAQRDDAVKSLAYEAETRLHDPVYGCVGVISLLQQRLRQIQMELQSAKKELSTYVSPQTMQILLANPGMVPSADIVVPPSHQPLFNHVGNNMAPQQILVGHGGGQTVVRDPQQQDFQEAQQIALATREQQQMFRNYEQKVLGGFEPSNGGFGAQGELLSPLALGNFGNVGAYQMQQLGEQHLIESQLLLSPQQGQPHQQQQCESEDTKNVLDFSIK* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1125 272 Coils Coil 86 106 - -
Vra7g1125 272 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 255 - -
Vra7g1125 272 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Vra7g1125 272 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 3 255 - -
Vra7g1125 272 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1125 Vra-Chr7 27143794 27145721 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1125 1 120 AS2 family AT5G66870 71.667 3.71e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra7g1125 LOB 2.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1125 - - gmx:100796406 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0605 11 4764929 4768893 Vra7g1125 7 27143794 27145721 PCT