Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1124 ATGACCCCGTGCGCCGCATGCAAGTACCAACGGCGGAGGTGCGGATCGGAGTGCGTGATGGCGTCGCATTTCCCGGCTGAGAGCATTCAGCGGTTCGCGTACGTGCACCATGTGTTTGGCGGGGGCAACGTGAGTAACATTTTGAAGTCGACGTCGCCGGATTTGCGGAAGTGGGTGGCGAGGGCGCTGGCGTACCAAGCGGAGGCGCGTGTGAGAGACCCGGTGCACGGATGCGTGGGGTTGATATGGGAGCAGGAGGAGACTCTGGGAATCCTGAAAGAGAAGCTGGAGAAAGCGAAAAGGGAACTGGCCCAATACGTGGGCCCAGATGTTGTGCTAAAGATGATTGAGCAGTGTTCCTCCGATCCGCATGCGAAGACGGTGAACCTTATGGCTCCTCTCTCTGCCCCCGCTGATGATTTTGATCTTTCTTCATGGGATCCTTTTCCGGCTTGGGAATCTTCTTCCTCACGCCGCCTGCCATCTCAAGCTGACGCTAAGGGTAAGACTATTGCTCCTCCTTCTTGA 528 0.5701 MTPCAACKYQRRRCGSECVMASHFPAESIQRFAYVHHVFGGGNVSNILKSTSPDLRKWVARALAYQAEARVRDPVHGCVGLIWEQEETLGILKEKLEKAKRELAQYVGPDVVLKMIEQCSSDPHAKTVNLMAPLSAPADDFDLSSWDPFPAWESSSSRRLPSQADAKGKTIAPPS* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1124 175 Coils Coil 82 102 - -
Vra7g1124 175 ProSiteProfiles LOB domain profile. 2 103 IPR004883 -
Vra7g1124 175 Pfam Lateral organ boundaries (LOB) domain 3 100 IPR004883 -
Vra7g1124 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 2 127 - -
Vra7g1124 175 MobiDBLite consensus disorder prediction 152 175 - -
Vra7g1124 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1124 Vra-Chr7 27139462 27140491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1124 2 117 AS2 family AT5G66870 48.276 1.59e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra7g1124 LOB 7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1124 - - gmx:102663028 174.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1124 7 27139462 27140491 Vra11g0605 11 4764929 4768893 PCT