Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1123 ATGGAACTGAGCTTGGATTTGAGCTTGGCCTTTGTCCCCGGAAGAACCGTTCGTCAGATTCTTGGCCAGGTTGCTCAGAACGAAGATGGGTCTCAGAGAATGGCCACGCTTGAGGATTTTCTCCAAAAGTTGGAAGATGAGAAGAGAAAGATCGAGTCTTTCAAACGTGAACTTCCTCTTTGCATGCTCCTCGTCAACGATGCTATTACTAAATTGAAAGAGGAGATAAACGGAGGTGTGAGAATGCAAGAAGAACCCGTGGTTTTGAAAACCAATTCTGAAGGAAGTGAGACTTTAAACATGGGTAAGGAACGCAGTAACATGAAGAATTGGATGAACTCTGTTCGGCTATGGAACGTTGAATCCAAACCGAGGACAGAAGAGGACGATCGATGTGTCCCCGACAATCCAAATCAACCACAGAATGAGACCAACAAGAGTAGAGGAGCAGCATTAAATGGAAACAATTGTGTCTTAAAAACAGTGATGAGTGAAGAGAAGGGGGTGTCACAGGTTCCCAGCGTTGGTTTGATGAGACCAGTGTTTGAATTGAATGATAGAAAAGCAGAAAGTAGTAATGAACATGGGTCGTCCTTGATTGCAACAAGATCATTAGAGATAAAGGGTCAAGCACAACCTCAGCAGAATCCGAGGAAACAAAGGCGATGCTGGTCACCAGAACTTCATAGGCGATTTGTCGATGCCCTTCAACAATTAGGGGGACCACAAGTGGCCACTCCAAAGCAGATTAGAGAAGTGATGCAGGTGGTAGGCCTCACAAATGATGAAGTGAAAAGCCATTTGCAGAAGTACAGACTTCATTTTAGAAGACCTCAAGTTTGTTCGGTTGAGGTAGCTAATGGTGGGTTATGCCTTATGGTAAAGGATAATAATAAATCAAAAGGGAACTTATTATCACAATCTGGCTCTCCACAAGGTCCTCTTTTCTTAGGAGGGTCTGGACGCAACAGCATGGACACAGAAGAAGATGAACAATCAGATTGCCACAATTGGAAAGGTGCTCTTCACCACCAACCAGAAGCTGAACTTCTATGA 1056 0.4403 MELSLDLSLAFVPGRTVRQILGQVAQNEDGSQRMATLEDFLQKLEDEKRKIESFKRELPLCMLLVNDAITKLKEEINGGVRMQEEPVVLKTNSEGSETLNMGKERSNMKNWMNSVRLWNVESKPRTEEDDRCVPDNPNQPQNETNKSRGAALNGNNCVLKTVMSEEKGVSQVPSVGLMRPVFELNDRKAESSNEHGSSLIATRSLEIKGQAQPQQNPRKQRRCWSPELHRRFVDALQQLGGPQVATPKQIREVMQVVGLTNDEVKSHLQKYRLHFRRPQVCSVEVANGGLCLMVKDNNKSKGNLLSQSGSPQGPLFLGGSGRNSMDTEEDEQSDCHNWKGALHHQPEAELL* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1123 351 Coils Coil 27 57 - -
Vra7g1123 351 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 219 274 IPR006447 GO:0003677
Vra7g1123 351 Gene3D - 218 276 - -
Vra7g1123 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 216 276 IPR017930 -
Vra7g1123 351 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 343 - -
Vra7g1123 351 MobiDBLite consensus disorder prediction 302 335 - -
Vra7g1123 351 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 343 IPR044787 GO:0003700|GO:0006355
Vra7g1123 351 MobiDBLite consensus disorder prediction 135 151 - -
Vra7g1123 351 Pfam Myb-like DNA-binding domain 221 272 IPR001005 -
Vra7g1123 351 SUPERFAMILY Homeodomain-like 217 277 IPR009057 -
Vra7g1123 351 MobiDBLite consensus disorder prediction 122 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1123 Vra-Chr7 27131976 27134247 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1123 1 275 G2-like Transcription Factor Family AT4G37180 38.869 8.83e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra7g1123 Myb_DNA-binding 9.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1123 - - gmx:100794220 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1123 7 27131976 27134247 Vra11g0607 11 4785639 4788040 PCT