Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1122 ATGGATCGGGCGGCGTTGACGGTCGGACCGGGCATGGACATGCCGATCATGCACGACAGTGACCGTTACGATCTGGTCCGTGACATCGGCTCCGGAAATTTCGGCGTGGCCAGGCTGATGCAGGATAAACAGACCAAGGAACTCGTTGCCGTCAAGTACATCGAGAGGGGCGATAAGATTGATGAAAATGTGAAGAGGGAAATTATTAACCACAGGTCTTTGAGACATCCCAATATTGTTAGGTTTAAAGAGGTTATTTTAACACCTACTCATCTGGCGATTGTAATGGAATATGCCTCTGGAGGCGAGCTCTTTGAGAGAATCTGCAATGCTGGGCGTTTTACCGAGGACGAGGCTCGATTCTTCTTTCAGCAACTCATATCCGGGGTTAGTTATTGCCATGCTATGCAAGTATGTCATCGGGACTTAAAGCTGGAAAACACTTTGTTGGATGGAAGCCAGGCACCTCGTTTGAAGATATGTGATTTTGGGTACTCCAAGTCTTCAGTGCTACATTCACAACCGAAGTCAACTGTGGGGACTCCTGCATATATTGCTCCAGAAGTATTGTTGAAACAAGAGTATGATGGCAAGCTTGCAGATGTCTGGTCGTGTGGAGTGACCCTATATGTGATGCTAGTGGGAGCATATCCTTTTGAAGATCCTAATGAACCAAAGGACTTTCGGAAGACAATTCAGAGAATTCTTAGTGTCCAATATGCCATTCCTGACTGTGTTCAAATATCTCAAGAGTGTCGCCACCTTATTTCAAGGATTTTTGTTTTTGACCCAGCAGAGAGAATCACCATGTCTGAAATCTGGAACCATGAATGGTTTCTGAAGAATCTCCCTGCGGATCTGATGGATGAGAGGATAATGAGTAATCAATTTGAAGAGCCAGACCAACCCATGCAGAGCATTGATACGATCATGCAGATAATTTCAGAAGCTACGGTACCAGCAGCTGGGACCTATACTTTTGACCAGTTAATGGGGGAGCAAATTTATGACTTAGAATCTGAATCTGATGCTGAATCTGAGCTTGATATAGATAGCAGTGGGGAGATAGTGTATGCCATATAG 1083 0.4497 MDRAALTVGPGMDMPIMHDSDRYDLVRDIGSGNFGVARLMQDKQTKELVAVKYIERGDKIDENVKREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFTEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSQAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKQEYDGKLADVWSCGVTLYVMLVGAYPFEDPNEPKDFRKTIQRILSVQYAIPDCVQISQECRHLISRIFVFDPAERITMSEIWNHEWFLKNLPADLMDERIMSNQFEEPDQPMQSIDTIMQIISEATVPAAGTYTFDQLMGEQIYDLESESDAESELDIDSSGEIVYAI* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1122 360 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vra7g1122 360 Gene3D Transferase(Phosphotransferase) domain 1 99 286 - -
Vra7g1122 360 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Vra7g1122 360 PANTHER SERINE/THREONINE KINASE 14 354 - -
Vra7g1122 360 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Vra7g1122 360 SMART serkin_6 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1122 360 ProSiteProfiles Protein kinase domain profile. 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1122 360 Pfam Protein kinase domain 23 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1122 360 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 14 354 - -
Vra7g1122 360 SUPERFAMILY Protein kinase-like (PK-like) 16 317 IPR011009 -
Vra7g1122 360 CDD STKc_SnRK2 22 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1122 Vra-Chr7 27098097 27102937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1122 22 289 CBL-interacting serine-threonine protein kinases AT4G24400 43.682 1.14e-66 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vra7g1122 Pkinase 4.1e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1122 K14498 - gmx:100806949 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g1122 7 27098097 27102937 Vra11g0609 11 4815223 4824390 PCT