Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1088 ATGAGCAAATCTCTGCTGGCTTTTGTTGCTACAGCCATTTCGACAAGGTTCCGCGTTCCTCTTCCTCAAATTCAATACCGATTCTACTGTTCTTCACCCTCTCATCCTTCATCCAACAAGCTCTTTGTTGGAGGGTTGTCATGGTCAGTGGACGAGAAGTCGCTCAAAGACGCTTTCTCTTCCTTCGGAGACGTCACCGAAGTGAGGATAGTGTATGATAAAGACAGTGGCAGGTCTAGAGGCTTTGGATTTGTCATTTTTTCGAATGAAGATGATGCAAAATGTGCAAAGGAAGCAATGGATGGAAAGGCACTGTTGGGCAGACCATTGAGGATAAGTATTGCACTTGAGAAGGCCCGAGGTGTACCTGTTGTAGTTCCTCGACTTTCAGATATTGGACATTTGAACAGGCGCTAA 417 0.4556 MSKSLLAFVATAISTRFRVPLPQIQYRFYCSSPSHPSSNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRSRGFGFVIFSNEDDAKCAKEAMDGKALLGRPLRISIALEKARGVPVVVPRLSDIGHLNRR* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1088 138 Gene3D - 26 121 IPR012677 -
Vra7g1088 138 SMART rrm1_1 40 113 IPR000504 GO:0003723
Vra7g1088 138 SUPERFAMILY RNA-binding domain, RBD 19 121 IPR035979 GO:0003676
Vra7g1088 138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 117 IPR000504 GO:0003723
Vra7g1088 138 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL 29 135 - -
Vra7g1088 138 PANTHER TRANSFORMER-2-RELATED 29 135 - -
Vra7g1088 138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 111 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1088 Vra-Chr7 26592828 26597952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1088 40 118 Eukaryotic Initiation Factors Gene Family AT1G71770 37.975 5.26e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1088 - - gmx:100810104 228.409