Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1086 ATGGGAATAGCAACACCCTCTTCTTCCCTTCCTTCTATTATTTCTCACTCCAAGACATACCAGCAACACCATTCCAATTCTATGTCCCAAGATTACCACCACCAAGGAATCTTCAGCTTCCCGAATGGGTTCCAGAGATCGGCTACAACCATGAGTCACCAAGACCCTCACCAACAACAGCAGCACCAGCAGATTCGTAGGGACAAAGTGAGAGTGCAGGGCTTCGAGCCACAGCAAACTTTGGTTCCCATAGAGGAAGACGAACCGGGAAGCCTCCCGGTATACGAAACTGCAGGGATGTTATCAGAGATGTTCACTTTTCCTCCCGGTGCCGCCACAGAATTATTGGAACAACAACAGCATCAAGCACAACAACAGCAATCAATGACGGCGACTTTTCGGTCGTCGGCAAGAGCAGTAGGCAGTGGCAGCGAGTGGTACGGAAACAGACAAGGGATGCTAACCGGGTTGGGACCGTTGGGAGATTCCAAAAATCATCATCATGGCAGTGTGAATAGCCGTGACAGTGGCAGCAGCAACATAGTTCAGCATCAGCATCATCATCATCACCACAACCACCATCATCACCATCAGATGTCAAGCATTAATGCAGACTCAGCAGCTGCCATGCAGCTTTTTCTCATGAACCCGCAAACCACCAGATCCCCTTCTCCCCCTCCGCCTCCTTCTTCCACTCTCCACATGTTACTTCCCACGTTTCCTCCGGGCTCAGGAGGGTCTTTTGGTCAATTCACGTGGCTCCCTGACACTGCTCAAGATGGAGGAGGACCCAGTACGGTTGTGGAAGGCCCCGGTCACGGTCAAGGACTTTCCTTATCCTTGTCGTCCTCCTTAGAAGCTGCGAAAGCGGAGGAACTTAGGATGGGGGATAGTGGGTTTTTGTATTACAATCAAGCTAGTGGAGGACCCTCTTCATATAAGAGTGCTCTCGGGGGTCATCACCACCAAGCATTGCTGGGACAGACCCATCAGGGGCATGTTGGCTTTGCGGCATCATCGTCCACATCATCCTTAGGTGTTGTCAACGCCTTGAGGAATTCAAAGTATATCAAGGCTGCTCAGGAATTGCTTGAAGAGTTTTGCAGTGTTGGGAGGGGCCAGTTCAAGAAGAACAAGTTCAATAGGCAACTCTCAAACCCTAGCTCCAATCTTGGAGGTAGTGGCGGCGGCGGCGGTGCTTCCTCGTCTTTATCAAAGGATGTTCCTCCTTTGTCAGCAGCTGATAGGATTGAGCATCAAAGGAGGAAGGTCAAACTTCTAACAATGCTTGACGAGGTAGATCGGAGATACAGTCACTACTGCGAGCAAATGCACATGGTGGTGAACTCGTTTGACATGGTGATGGGTTTTGGTTCCGCTGTGCCATACACAGCACTTGCGCAAAAAGCAATGTCTCGTCATTTTAGGTGTCTAAAGGATGCCATAACAGCGCAACTGAAGCATAGTTGTGAGCTGTTGGGAGAGAAAGATGGGGCAGGGAACTCGGGGTTGACCAAAGGAGAGACCCCAAGGCTCAAGATGCTTGAACAAAGTTTGAGACAGCAAAGAGCGTTTCACCAAATGGGGATGATGGAACAGGAAGCTTGGAGACCCCAGAGAGGGTTGCCAGAACGATCTGTCAACATTTTGAGAGCCTGGCTTTTCGAGCATTTCCTTCATCCGTACCCAAGCGATGCAGATAAGCATCTGTTGGCACGACAGACTGGGCTATCGAGAAATCAGGTATCAAATTGGTTCATTAATGCAAGGGTTCGGTTGTGGAAACCCATGGTGGAAGACATGTACCAACAAGAACTCAAGGAAGCTGAAGGGGCAGAAGAGGAGAGAGAGAGAAACCAAAGCAGCAGCAATAACAGTGGCCACCAACTGGCACAAACCCCAACGCCCTCCACCACGGCATCGACAGCAACAGCGCCACCACCGCCTCCAACAACATCGACAGCGACGACACCACCAACAGCCAAAAGATCCGACACCGAAAGCGACCCTTCACTCGCTCCAATAAATAACAACAGGCCACTGGGAGCCTTCTCGGAAACACAACCCAACTCCTCAACCACCGCCACTGCCTCTGAGGTGGCGCCGCCCTCCGAGCTTCCCCGGTCGATGGGGGCTGATGACTCGTGCCGGCACGGTAGCCTCGTTGCGGCGGAGTTTGGGACTGGTCCTGGCGCTTCTGACATTGGTTCGACACTGATTAGGTTTGGGACCACCGCAGGTGACGTGTCACTGACACTAGGGCTACGCCACTCCGGGAACATGCCGGAGAAAACTCCGTTCTCCGTTAGGGACTTTGGAGGCATCTAA 2328 0.5176 MGIATPSSSLPSIISHSKTYQQHHSNSMSQDYHHQGIFSFPNGFQRSATTMSHQDPHQQQQHQQIRRDKVRVQGFEPQQTLVPIEEDEPGSLPVYETAGMLSEMFTFPPGAATELLEQQQHQAQQQQSMTATFRSSARAVGSGSEWYGNRQGMLTGLGPLGDSKNHHHGSVNSRDSGSSNIVQHQHHHHHHNHHHHHQMSSINADSAAAMQLFLMNPQTTRSPSPPPPPSSTLHMLLPTFPPGSGGSFGQFTWLPDTAQDGGGPSTVVEGPGHGQGLSLSLSSSLEAAKAEELRMGDSGFLYYNQASGGPSSYKSALGGHHHQALLGQTHQGHVGFAASSSTSSLGVVNALRNSKYIKAAQELLEEFCSVGRGQFKKNKFNRQLSNPSSNLGGSGGGGGASSSLSKDVPPLSAADRIEHQRRKVKLLTMLDEVDRRYSHYCEQMHMVVNSFDMVMGFGSAVPYTALAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGAGNSGLTKGETPRLKMLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQELKEAEGAEEERERNQSSSNNSGHQLAQTPTPSTTASTATAPPPPPTTSTATTPPTAKRSDTESDPSLAPINNNRPLGAFSETQPNSSTTATASEVAPPSELPRSMGADDSCRHGSLVAAEFGTGPGASDIGSTLIRFGTTAGDVSLTLGLRHSGNMPEKTPFSVRDFGGI* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1086 775 SUPERFAMILY Homeodomain-like 538 603 IPR009057 -
Vra7g1086 775 MobiDBLite consensus disorder prediction 1 67 - -
Vra7g1086 775 MobiDBLite consensus disorder prediction 622 640 - -
Vra7g1086 775 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 79 764 - -
Vra7g1086 775 MobiDBLite consensus disorder prediction 607 714 - -
Vra7g1086 775 MobiDBLite consensus disorder prediction 641 655 - -
Vra7g1086 775 Pfam Associated with HOX 351 483 IPR006563 -
Vra7g1086 775 MobiDBLite consensus disorder prediction 183 197 - -
Vra7g1086 775 SMART prehox3 345 484 IPR006563 -
Vra7g1086 775 MobiDBLite consensus disorder prediction 381 415 - -
Vra7g1086 775 MobiDBLite consensus disorder prediction 142 202 - -
Vra7g1086 775 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 79 764 - -
Vra7g1086 775 Coils Coil 599 622 - -
Vra7g1086 775 Pfam Homeobox KN domain 553 592 IPR008422 GO:0003677|GO:0006355
Vra7g1086 775 CDD homeodomain 536 597 IPR001356 GO:0003677
Vra7g1086 775 ProSiteProfiles 'Homeobox' domain profile. 533 596 IPR001356 GO:0003677
Vra7g1086 775 MobiDBLite consensus disorder prediction 1 59 - -
Vra7g1086 775 MobiDBLite consensus disorder prediction 656 700 - -
Vra7g1086 775 MobiDBLite consensus disorder prediction 381 408 - -
Vra7g1086 775 SMART HOX_1 536 600 IPR001356 GO:0003677
Vra7g1086 775 Gene3D - 539 601 - -
Vra7g1086 775 MobiDBLite consensus disorder prediction 607 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1086 Vra-Chr7 26548121 26556158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1086 345 775 Homeobox Transcription Factor Family AT2G23760 55.236 4.09e-148 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Vra7g1086 POX 6.5e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1086 - - gmx:100814959 1151.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0638 11 5066482 5073832 Vra7g1086 7 26548121 26556158 PCT