Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1085 ATGGGTTGGTTTACTAAATTGCTCAAGGGATCCAACCGTAAACATTCAGGAGGAAGATATCATGGGAAATATGAAGACGACAGATATTCAGACAATCATGATAATTCAGCGGATGATTTGACGGAAATTGAGAAAGAAGAAATTGATCGGGCAATAGCACTCTCTCTTTCAGAGGCAGATCCGAAAGGGAAAAAAGTTATGGAGGATGACTCTGAATATGAAGATGATGAACTGTGTCCACTTGATGATGAGGAAGACAAACGTGCTGGAGAAGTTCAGCAAGATGAAGATGACCATCGTGCTCAAATTCAACAGGATGAAGACAAAAATCTTGATGAATTTCAACTTGAGGAAGATGAACAACTGGCCAGGGCAATTCAAGAAAGTTTGAGCATTAGTTCTCCTCCTCGATCTGACACTGATTCTTTATTTCAACCTTTTGCAAACTTATTCCCACCTGTATACAGGACTTGTGCTGGTTGCAATGCCGAGATTGGCAGTGGAAGATTTTTGAGTTGCATGGGAGGTTTTTGGCATCCCGAATGTTTTTGTTGTCATGCTTGCAAACTTCCAATCACTGATTATGAGTTTTCAATGTCTGGAAATGGCCGTTATCATAAATCCTGCTATAAGGAGTTACATCATCCGAAATGTGATGTTTGCAAAAACTTTATCCCACCAAACGCAGGTGGCCTCATTGAGTATAGAGCACATCCTTTCTGGCTACAAAAATATTGCCCATCGCATGAGCGTGATGGAACTCCTCGTTGTTGTAGCTGTCAAAGAATGGAGTCTGTGGATGCCAAATATCTGTTGCTTGATGATGGCCGAAAGCTGTGTCTGGAGTGTCTTGACTCAGCTATCATGGATACTCATGAATGCCAACCTCTCTATGTTGAGATACAAGAATTTTATGAAGGTTTACATATGAAGATAGAGCAGCAAATTCCTATGCTTTTGGTTGAGAGACAGGCGCTGAACGAAGCCATGGAGGGAGAGAAGAATGGTCATCACCACTTACCTGAAACTAGAGGACTTTGCTTGTCTGAAGAGCAAACTGTTCCCACTATTTTAAGGAGACCAAGGATAGGGGCAGGATACCAGCTCATAGATATGATAACTGAGCCTTTTAGACTGATCCGTCGATGCGAAGTGACAGCCATACTTGTTTTGTATGGCCTTCCCAGGCTATTGACTGGATCAATCCTGGCTCACGAAATGATGCACGCGTGGCTTAGACTTAAAGGCTATGGCAATCTGAGGCCAGAAGTTGAAGAGGGAATTTGCCAAGTCTTGGCTCATATGTGGTTAGATTCAGAGATCTATTCTAGCTCTGGGAACGAAGGTGCATTACCATCATCATCGTCTTCTTCTTCTTCTTCATCCTCCTCCTCACCTTCATCATCTTCATCATCTAAGAAGGGTAAACGTTCTGAATTTGAGAAGAAACTCGGTGAATACTTCAAACACCAGATTGAGTCAGATAGTTCATCAGCTTATGGAGATGGATTCAGAGAGGGTAACCAGGCAGTGCTCAAGTATGGCCTTAAAAGGACCCTTGACCATATCCGAATGACTGGTAGTTTTCCATATTGA 1596 0.4242 MGWFTKLLKGSNRKHSGGRYHGKYEDDRYSDNHDNSADDLTEIEKEEIDRAIALSLSEADPKGKKVMEDDSEYEDDELCPLDDEEDKRAGEVQQDEDDHRAQIQQDEDKNLDEFQLEEDEQLARAIQESLSISSPPRSDTDSLFQPFANLFPPVYRTCAGCNAEIGSGRFLSCMGGFWHPECFCCHACKLPITDYEFSMSGNGRYHKSCYKELHHPKCDVCKNFIPPNAGGLIEYRAHPFWLQKYCPSHERDGTPRCCSCQRMESVDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYVEIQEFYEGLHMKIEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVPTILRRPRIGAGYQLIDMITEPFRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYGNLRPEVEEGICQVLAHMWLDSEIYSSSGNEGALPSSSSSSSSSSSSSPSSSSSSKKGKRSEFEKKLGEYFKHQIESDSSSAYGDGFREGNQAVLKYGLKRTLDHIRMTGSFPY* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1085 531 ProSitePatterns LIM zinc-binding domain signature. 158 192 IPR001781 -
Vra7g1085 531 Pfam LIM domain 158 212 IPR001781 -
Vra7g1085 531 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 154 183 - -
Vra7g1085 531 PANTHER PROTEIN DA1-RELATED 2 1 531 IPR045218 -
Vra7g1085 531 Gene3D Cysteine Rich Protein 155 217 - -
Vra7g1085 531 MobiDBLite consensus disorder prediction 1 38 - -
Vra7g1085 531 CDD LIM_DA1 158 210 - -
Vra7g1085 531 MobiDBLite consensus disorder prediction 448 473 - -
Vra7g1085 531 ProSiteProfiles LIM domain profile. 156 216 IPR001781 -
Vra7g1085 531 SMART uim 117 136 IPR003903 -
Vra7g1085 531 SMART uim 43 62 IPR003903 -
Vra7g1085 531 MobiDBLite consensus disorder prediction 448 478 - -
Vra7g1085 531 MobiDBLite consensus disorder prediction 18 38 - -
Vra7g1085 531 MobiDBLite consensus disorder prediction 54 107 - -
Vra7g1085 531 MobiDBLite consensus disorder prediction 83 107 - -
Vra7g1085 531 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Vra7g1085 531 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 185 244 - -
Vra7g1085 531 SMART lim_4 157 209 IPR001781 -
Vra7g1085 531 Pfam Protein DA1 307 526 IPR022087 -
Vra7g1085 531 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1085 Vra-Chr7 26482321 26487144 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vra7g1085 DA1-like 1.2e-104 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1085 - - gmx:100806605 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0639 11 5089258 5095367 Vra7g1085 7 26482321 26487144 PCT