Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1068 ATGGCTGAATCTAACTCTGAGTCTCCTACGCCTTCCTCCTTTGGCCCCATGAGAAGCACACCATGCGATGACCAAGTTGGTGGGTTTGATTGGATGGTCCTTGTGGCAGCCATTCTATGTGCCTTGGTGTGTGCTCTTGGCCTCAACACGATGCTGCAATGTGTATTCCAATGTGCTTCTCGTGTTCTGACACAACCTCTCCAATGGATGGCTTCTCGCAGGCTGAATTGTGGTCTGAAGAAGAAGGAAATGGTGGCTTTGCCAACCTCAACCTTCACAAACTCTCCCTCTCCATCTTCACCTTCTACCTGCGTCATTTGCTTGGCTGAGTTCTGTGATGGAGACCCTATAAGGTTCCTCCCAAACTGCAACCACTTTTTCCATGTTCTTTGCATTGACAAGTGGCTCCTCTCTCACTCTTCTTGCCCTACTTGCAGACACCTACTCAACCCAAATCATCACCATCTTCACTCCTTACATACTGTCATAACAACTTAG 498 0.4819 MAESNSESPTPSSFGPMRSTPCDDQVGGFDWMVLVAAILCALVCALGLNTMLQCVFQCASRVLTQPLQWMASRRLNCGLKKKEMVALPTSTFTNSPSPSSPSTCVICLAEFCDGDPIRFLPNCNHFFHVLCIDKWLLSHSSCPTCRHLLNPNHHHLHSLHTVITT* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1068 165 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Vra7g1068 165 PANTHER OS06G0666500 PROTEIN 19 155 - -
Vra7g1068 165 Pfam Ring finger domain 103 146 IPR001841 -
Vra7g1068 165 SMART ring_2 104 145 IPR001841 -
Vra7g1068 165 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 19 155 - -
Vra7g1068 165 SUPERFAMILY RING/U-box 103 152 - -
Vra7g1068 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 155 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1068 Vra-Chr7 26170305 26171110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1068 7 149 C3H Transcription Factor Family AT3G10910 38.411 1.25e-31 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1068 - K19040 cam:101507208 209.534