Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1054 ATGGCGCCGAGCACCGGAGACCTCCAACTAACTTCTCCCGGCGCCGGCAAAGGTTCCGACGAACTCGAAGATGTTCGCCTCCTCGATTCCTACGAAAAACACTACATCCATCACGATGAAACGAAGCGGATTCAGGTCAGAATCACCGGCATGACCTGTGCCGCGTGTTCCAACTCCGTCGAAACCGCTCTCAGGTCCGTTAACGGCGTAACAGAGGCTTCCGTTGCTCTTCTTCAAAACAAAGCTGACGTCATTTTCAATCCGAGCCTCGTCAAGGATGTCGACATTAAGAATGCGATTGAAGACGCAGGTTTTGAGGCGGAGATCTTGCCGGATTCCGGTCCGGCTGACCGCGGCGGCGTAGCCGCCACGTTGGTGGGTCAGTTCACGATCGGCGGGATGACGTGTGCGGCTTGTGTGAATTCCGTTGAGGGCATTTTGAGGAGGCTTAATGGAGTGAAAAGAGTGGTGGTGGCTTTGGCTACTTCATTGGGAGAGGTTGAGTATGATCCCAATGTGATTAGCAAAGATGATATTGTGGCGGCCATTGAAGACGCTGGTTTCGAGGGTTCGTTTGTGCAGAGTAATGGGCAGGATCAGGTTTTGTTCGGGGTTGGTGGTGTGTACTCTCTGGGTGATGCTCGGGTTTTGGAAGGGATGCTCAGTGGCACTAAAGGGGTGAGGCAGTTTCGGTTTGACCCGGTGTTGAATGAGCTTGATGTGGCTTATGACCCTGTAGTTATTAGTTCGAGGTCATTGGTTGATGGCATCCAGTTGGGAAGTAATGGTAAGTTTAGATTGCATGTTAGGAATCCATACGCTAGAATGGCTTCCAAAGATGGTTCGGAAACCTCAACTATGTTTCGGCTTTTCATTTCCAGCTTGGTTCTCAGTGTTCCTCTATTCTTCATTGGGGTAATCTGTCCTCATATTCCGTTTGTTTACTCCTTGTTACTTTGGAGATGTGGGCCTTTTCTCATGGGTGATTGGTTGAAGTGGGCGTTGGTTAGTGTCATTCAATTTGTGATTGGGAAACGCTTCTATATAGCGGCTGGAAGAGCTCTAAGAAATGGTTCAACAAACATGGATGTTCTGGTTGCTTTGGGAACTACAGCCTCTTATGTTTATTCCGTTTGTGCTCTTCTATACGGTGCCCTTACAGGATTTTGGTCTCCAACATACTTTGAAACAAGTGCTATGCTTATAACATTTGTATTGCTCGGCAAGTATTTGGAGTGCCTTGCCAAGGGAAAGACATCTGATGCTATTAAGAAGCTAGTGGAACTTACTCCAGCAACAGCTTTATTGGTTGTCAAAGATAAAGGTGGTAGAACTATTGAAGAAAGGGAAATAGATTCCTTACTCGTTCAGCCTGGTGACACATTAAAAGTTCTTCCTGGTACAAAGATTCCTGCTGATGGTATTGTTACTTGGGGCTCAAGTTATGTAAATGAGAGTATGGTGACCGGTGAATCAACACCCGTTTCGAAGGAGGTGAATGCATCTGTTATTGGAGGTACAATTAATATGCATGGTGTCCTTCACATTCAAGCCACCAAAATAGGATCAGATACAGTTTTGAGTCAGATAATTAGTTTGGTGGAGACAGCTCAGATGTCCAAAGCCCCTATTCAAAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCTACGGTTGTGAGTTTGTCATTATTGACACTACTGTGCTGGTATATAGCTGGGGCTCTTGGAGCATACCCAGAGAAATGGCTGCCAGAAAATGGAAATCACTTTGTTTTTGCGCTTATGTTTTCAATATCTGTTGTGGTGATTGCATGTCCATGTGCACTTGGTTTGGCAACACCAACTGCTGTCATGGTGGCAACAGGGGTTGGGGCCAACAATGGCGTGTTAATTAAAGGAGGAGACTCCTTGGAAACGGCTCAGAAGGTGAAATATGTCATATTTGACAAAACAGGCACTCTAACTCAGGGGAAATCCACTGTTACTGCTGCGAGGGTATTCACAGGAATGGACCGCGGAGAATTTCTTACATTAGTGGCTTCTGCTGAGGCTAGCAGCGAACACCCTCTGGGAAAAGCAATATTGCAATATGCCCGCCATTTTCTTTTCTTTGATGAGTCTTCGCCTACCAGTGGTACTAAGAATGATGCTGCAGTGTTAAAGTCAGGGTGGCTTTATGATGTCTCAGACTTCTCTGCTCTTCCAGGACGGGGTGTCCAGTGTTTTATAGATGGGAAGCGTATTTTGGTTGGTAACCGGAAGCTGCTGGAAGAAAATGGCATAGAGATTTCTACAGAAGTGGAAAGTTTTGTTGTAGAGCTTGAAGAAAGTGCAAAGACAGGGATACTGGTAGCATATGATGATGTATTAACTGGAGTCTTAGGGATTGCAGACCCACTCAAGAGAGAAGCTTCTGTTGTTATAGAGGGCCTCCGGAAAATGGGAGTCATACCAGTAATGGTTACAGGAGATAACTGGAGAACAGCTCGAGCTGTTGCCAAGGAGGTTGGAATTGAAGATGTTAGGGCAGAGGTTATGCCTGCAGGAAAGGCTGATGTTGTTCGTTCATTCCAAAAGGATGGAAGTATAGTTGCAATGGTTGGTGATGGAATCAATGACTCGCCAGCATTAGCTGCTGCAGATGTAGGTATGGCAATTGGGGCAGGGACAGATGTGGCAATAGAAGCTGCTAACTACGTGCTGATGAGAGATAACTTGGAAGATGTGATCACAGCCATTGATCTTTCCAAAAAGACCTTCTTACGCATTCGATTGAATTATGTATTCGCGATGGCATACAATGTTGTTGCTATACCTGTTGCTGCAGGAGTTTTCTTTCCTTCTTTGAGGATCCAGCTGCCACCATGGCTTGCTGGTGCATGCATGGCTATGTCATCTGTTAGTGTGGTATGCTCTTCTCTGCTTTTGAGAAGATATACAAGGCCCAAACTCACCACAATACTTGAAATTCTTGTAAATTAA 2985 0.4566 MAPSTGDLQLTSPGAGKGSDELEDVRLLDSYEKHYIHHDETKRIQVRITGMTCAACSNSVETALRSVNGVTEASVALLQNKADVIFNPSLVKDVDIKNAIEDAGFEAEILPDSGPADRGGVAATLVGQFTIGGMTCAACVNSVEGILRRLNGVKRVVVALATSLGEVEYDPNVISKDDIVAAIEDAGFEGSFVQSNGQDQVLFGVGGVYSLGDARVLEGMLSGTKGVRQFRFDPVLNELDVAYDPVVISSRSLVDGIQLGSNGKFRLHVRNPYARMASKDGSETSTMFRLFISSLVLSVPLFFIGVICPHIPFVYSLLLWRCGPFLMGDWLKWALVSVIQFVIGKRFYIAAGRALRNGSTNMDVLVALGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELTPATALLVVKDKGGRTIEEREIDSLLVQPGDTLKVLPGTKIPADGIVTWGSSYVNESMVTGESTPVSKEVNASVIGGTINMHGVLHIQATKIGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVSLSLLTLLCWYIAGALGAYPEKWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDSLETAQKVKYVIFDKTGTLTQGKSTVTAARVFTGMDRGEFLTLVASAEASSEHPLGKAILQYARHFLFFDESSPTSGTKNDAAVLKSGWLYDVSDFSALPGRGVQCFIDGKRILVGNRKLLEENGIEISTEVESFVVELEESAKTGILVAYDDVLTGVLGIADPLKREASVVIEGLRKMGVIPVMVTGDNWRTARAVAKEVGIEDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDVAIEAANYVLMRDNLEDVITAIDLSKKTFLRIRLNYVFAMAYNVVAIPVAAGVFFPSLRIQLPPWLAGACMAMSSVSVVCSSLLLRRYTRPKLTTILEILVN* 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1054 994 SFLD p-type atpase 630 919 IPR044492 -
Vra7g1054 994 SUPERFAMILY HAD-like 647 974 IPR036412 -
Vra7g1054 994 TIGRFAM TIGR00003: copper ion binding protein 44 107 IPR006122 GO:0005507
Vra7g1054 994 TIGRFAM TIGR00003: copper ion binding protein 128 189 IPR006122 GO:0005507
Vra7g1054 994 Pfam E1-E2 ATPase 429 627 - -
Vra7g1054 994 Pfam Heavy-metal-associated domain 129 189 IPR006121 GO:0046872
Vra7g1054 994 Pfam Heavy-metal-associated domain 46 106 IPR006121 GO:0046872
Vra7g1054 994 SUPERFAMILY HMA, heavy metal-associated domain 128 196 IPR036163 GO:0046872
Vra7g1054 994 MobiDBLite consensus disorder prediction 1 21 - -
Vra7g1054 994 CDD P-type_ATPase_Cu-like 289 965 - -
Vra7g1054 994 PRINTS P-type cation-transporting ATPase superfamily signature 484 498 - -
Vra7g1054 994 PRINTS P-type cation-transporting ATPase superfamily signature 648 662 - -
Vra7g1054 994 PRINTS P-type cation-transporting ATPase superfamily signature 793 804 - -
Vra7g1054 994 PRINTS P-type cation-transporting ATPase superfamily signature 815 825 - -
Vra7g1054 994 PRINTS P-type cation-transporting ATPase superfamily signature 868 887 - -
Vra7g1054 994 PRINTS P-type cation-transporting ATPase superfamily signature 891 903 - -
Vra7g1054 994 PANTHER HEAVY METAL P-TYPE ATPASE 3 987 - -
Vra7g1054 994 Pfam haloacid dehalogenase-like hydrolase 644 882 - -
Vra7g1054 994 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 401 669 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra7g1054 994 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 717 953 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra7g1054 994 ProSitePatterns Heavy-metal-associated domain. 48 78 IPR017969 GO:0046872
Vra7g1054 994 ProSiteProfiles Heavy-metal-associated domain profile. 43 109 IPR006121 GO:0046872
Vra7g1054 994 ProSitePatterns Heavy-metal-associated domain. 131 160 IPR017969 GO:0046872
Vra7g1054 994 Gene3D - 659 801 IPR023299 GO:0000166
Vra7g1054 994 SUPERFAMILY HMA, heavy metal-associated domain 36 112 IPR036163 GO:0046872
Vra7g1054 994 CDD HMA 45 108 IPR006121 GO:0046872
Vra7g1054 994 SUPERFAMILY Calcium ATPase, transduction domain A 448 534 IPR008250 -
Vra7g1054 994 Gene3D - 639 918 IPR023214 -
Vra7g1054 994 SUPERFAMILY Calcium ATPase, transmembrane domain M 382 953 IPR023298 -
Vra7g1054 994 Gene3D - 127 192 - -
Vra7g1054 994 PRINTS Copper-transporting ATPase 1 signature 43 68 - -
Vra7g1054 994 PRINTS Copper-transporting ATPase 1 signature 69 92 - -
Vra7g1054 994 PRINTS Copper-transporting ATPase 1 signature 98 118 - -
Vra7g1054 994 Gene3D - 41 112 - -
Vra7g1054 994 SFLD C1.7: P-type atpase like 630 919 - -
Vra7g1054 994 PANTHER ATP7, ISOFORM B 3 987 - -
Vra7g1054 994 ProSiteProfiles Heavy-metal-associated domain profile. 126 192 IPR006121 GO:0046872
Vra7g1054 994 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 362 977 IPR027256 GO:0006812|GO:0016021|GO:0019829
Vra7g1054 994 CDD HMA 128 189 IPR006121 GO:0046872
Vra7g1054 994 Gene3D - 416 538 - -
Vra7g1054 994 ProSitePatterns E1-E2 ATPases phosphorylation site. 650 656 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1054 Vra-Chr7 25923845 25929458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1054 1 991 Primary Pumps ATPases AT5G44790 74.826 0.0 1494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1054 K17686 - gmx:100798164 1728.38