Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1015 ATGAGTACAGGAGACAGGCCAAAAATGCATGAGCAAAGTGGTTGCTTTGATCCCAACACAATGGAAGAAAGTGTACCCTCTCTAAAGGATAACTTCCCTCAAACTCTTGCAGACCCTCTAATTCCATCATCACCTATGGTTGTAGATAACACCACAAACACTGATAATGGCCTTGAAGAGAATCTCAGGCTTTCTGTGGAGGAGCTCTCCTTTAACCATCACAATCTGCAACACCAAGATATCTCCACCTATGCAAGTGGAATCACTCCCACATCTGCTAGTGACATCCCTCATTCTCATTCTCAACAACATCTTTGTTTGAACATGGGAAACTCCTACATCAACAACACCAACAACATGGATAACCATTTGGTGCAACAGGTCATTGATGTTCTTCCCTATCAGCAGTCCACTTGGGACCCCACTACTGTTCAGGAATTGCCAGACATAGCCTATGCTAATCAAATAGAACAGCAACAAAATGAACAACAATTTCAGCAAATGGAGACTCAAAACTGCAGCCAAAGCTTCAACCCCTCTTCCATTCTAGACCCTCCTTACCCTTCACCAGATCTCCTAAACCTTCTCCACTTACCAAGATGCTCAGCCCCATCTTTGCACACCAATCCCACCATTTGCCTCACAAACCCAACTCAGAACACACCAAACTTTCAGAATCCACTGCCCTTTCTTGGAGACCTTCCAATAGGGTCAGACAACAACACAAGTGCATCCTCAGTTTTGTATGATCCTCTCTTCCACCTTAACCTTCCTCCACAGCCTCCAGCCCTCAGAGAGCTGTTTCAGTCTCTACCCCGTGGCTACAGCTTGCCAACCAACTCAAGGAATGGTTCACTCTTTGGAGGGGATGAGATTGAGGGAGACGGTAGCCAGCTTGACATGGGAGTGCTGGAATTCAACAGGGTCACTCCCACTGTTGCCAAAGGAAGAGGAGGAAAAGCTACCAAACATTTTGCAACCGAGAAACAAAGAAGAGAGCAACTCAATGGAAAATACAAAATCTTAAGAAATCTTATACCAAACCCCACCAAGATTGATAGAGCCTCCGTGGTGGGGGATGCCATTGACTACATAAGAGAGCTGATTAGAACAGTGAATGAACTCAAACTATTGGTAGAGAAGAAAAGGTATGGGAGAGAGAGGTGCAAAAGGCCTAAAACAGAAGAAGATGGTGCTGAGAGCTGTAACATAAAGCCTTTTGGTGATCCAGATGGGAGCATAAGGACCTCATGGCTCCAGAGGAAATCCAAAGACAGCGAGGTTGATGTCCGGATTATAGACGATGATGTCACAATCAAACTCTTCCAGAGGAAGAAAATCAACTGCCTGTTGTTTGTTTCCAAGGTTCTGGATGAACTTCAGTTGGAGCTTCATCATGTTGCAGGTGGACATGTTGGTGAATATTGCAGTTTCTTATTCAATAGCAAGATAATTGAAGGTTCCTCAGTCTATGCAAGTGCCATAGCCAACAGAGTCATCGATGTTTTGGACTGTCAGTACACAGCATCAGTTCCACATACAAACAACTACTAG 1554 0.4459 MSTGDRPKMHEQSGCFDPNTMEESVPSLKDNFPQTLADPLIPSSPMVVDNTTNTDNGLEENLRLSVEELSFNHHNLQHQDISTYASGITPTSASDIPHSHSQQHLCLNMGNSYINNTNNMDNHLVQQVIDVLPYQQSTWDPTTVQELPDIAYANQIEQQQNEQQFQQMETQNCSQSFNPSSILDPPYPSPDLLNLLHLPRCSAPSLHTNPTICLTNPTQNTPNFQNPLPFLGDLPIGSDNNTSASSVLYDPLFHLNLPPQPPALRELFQSLPRGYSLPTNSRNGSLFGGDEIEGDGSQLDMGVLEFNRVTPTVAKGRGGKATKHFATEKQRREQLNGKYKILRNLIPNPTKIDRASVVGDAIDYIRELIRTVNELKLLVEKKRYGRERCKRPKTEEDGAESCNIKPFGDPDGSIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKINCLLFVSKVLDELQLELHHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIDVLDCQYTASVPHTNNY* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1015 517 MobiDBLite consensus disorder prediction 1 25 - -
Vra7g1015 517 Pfam Helix-loop-helix DNA-binding domain 322 368 IPR011598 GO:0046983
Vra7g1015 517 Gene3D - 317 390 IPR036638 GO:0046983
Vra7g1015 517 CDD bHLH_AtMYC1_like 324 388 IPR045896 -
Vra7g1015 517 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 319 368 IPR011598 GO:0046983
Vra7g1015 517 PANTHER TRANSCRIPTION FACTOR BHLH91 9 514 IPR045895 GO:0006355|GO:0048658
Vra7g1015 517 PANTHER TRANSCRIPTION FACTOR BHLH91 9 514 - -
Vra7g1015 517 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 317 386 IPR036638 GO:0046983
Vra7g1015 517 SMART finulus 325 374 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1015 Vra-Chr7 24599074 24602017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1015 9 515 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 36.264 5.08e-90 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g1015 HLH 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1015 - - gmx:100782512 827.009