Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g1010 ATGCCACAAATAATGAGGTTTTCACCACTTGTAGTTGTGTTGGTTTTCTGTTTTTCTCCTATGCTGGTAGTCCCTGGTCTGGGCTACTCAGATCACACTACTTTGGGAGTGCTGTTGGAAGTGAAGAAGTCTTTTGTGAAAGACCCACGAAATGTTCTGAGTGATTGGTCAGAGGATAACATTGAATACTGCAGTTGGAGAGGGGTGTCATGTGAATTGATATCAGACTCAAATACAATTTCAAACTCTTTAGATGGTAACTCCATGCAAGTGGTGGGTCTCAATCTTTCTGACTCGTCACTCACAGGGTTTGTGTCACCTTCACTCGGTCGTTTGCAAAACCTGCTCCACCTTGATCTCTCCTCCAACAGCCTCACAGGTCCCATTCCACCTAATCTCTCCAACCTCACTTCCTTGGAATCTTTGCTTCTCTTCTCCAACCAACTCACGGGTCACATACCCGAAGAGTTCGGCTCGCTCAAGAGTCTCCGAGTCATGCGACTCGGTGACAATGCATTAACGGGAACGATTCCAGCGTCTCTCGCCAACCTGGTCAATTTGGTCAACCTTGGCTTGGCTTCCTGCGGACTCACCGGGTCCATTCCGAGGCAACTTGGTCAACTCAAACTCATGGAGAATCTGATTCTGCAAGACAACGAGTTGATGGGTCCGATTCCGACCGAGTTGGGGAACTGCTCAAGCCTCACTGTCTTTACTGCAGCTAACAACAAACTCAATGGATCAATACCCAGTGAACTGGGTCGACTCAGCAATCTGCAAATTCTCAACTTTGCCAACAACAGTATATCTGGGGAGATTCCGAGTCAACTCGGTAATATGAGTCAACTCGTTTACCTGAACTTCATGGGGAACCAGTTCGAGGGTACCATTCCTCCGTCTCTAGCTCAACTGGGTAATCTTCAAAATCTGGACTTATCAATGAACAAGCTCAGTGGAGGAATCCCAGAGGAGTTGGGCACCTTGGGTGAGTTGGCTTATTTGGTTCTGTCTGGTAACAACCTTAATGGTGTCATACCAAGGACCATATGTTCCAATGCAACAAGTTTGGAGCACTTGATGTTGTCAGAAAGTGGACTTCATGGTGAGATTCCAGGTGAATTGAATCAATGCCAGCAACTGATGCAACTCGATTTGTCCAACAATGCACTCAACGGATCCATACCTCTTGAACTTTATGAGTTGCTGCTGTTAACTGATCTCTTGCTGAACAATAACAGCTTGGTTGGTTCCATCTCTCCCTCCATTGGGAACCTCAGTGGCTTGCAGACACTTGCTTTGTTTCACAATAATTTGGAGGGTGTTCTGCCGAGAGAGATTGGAATGCTTGGCAAGTTGGAAATTTTGTATCTTTATGATAACCAATTGTCAGGGTCTATACCTACGGAGATTGGTAATTGTTCTAGCTTGCAAATGATTGATTTCTTTGGAAACCATTTCAGTGGGGAAATTCCAGTCACTATTGGAAGGCTGAAAAAGTTGAATTTCCTTCACCTTAGACAGAATGAGCTAGTTGGTGAGATTCCAGCCACCTTGGGTAATTGTCATAAACTGAGCATTCTAGATTTAGCTGACAATCAGCTCTCAGGTGCAATTCCTGCAACATTTGGATTCCTCAATGAATTACAGCAACTCATGATCTACAACAATTCCCTTGAAGGTAATCTCCCTCACCAACTGATAACCGTAAAAAACTTGACCAGAGTGAATCTTTCTAAAAACAGATTGAATGGTAGTATATCTGCATTGTGTAGCTCTCAGTCATTTCTTTCTTTCGATGTTACTGACAATGAGTTTGAGGGTGAAATTCCTTCCCAAATGGGAAACTCACCCTCCCTTGAGAGACTACGATTAGGTAACAACAACTTTTCTGGAGAAATTCCAAGGACATTGGGAAAAATCCGTGAGCTGTCATTATTAGACCTCTCAGGAAATTCACTCATTGGATCAATACCAGCTGAGCTTTCTTTGTGCAACAAACTGGCTTATATTGATTTAAGCAGTAACTTTCTTTTCGGACAAATACCATTATGGCTTGGAAGTTTATCTCAGTTGGGAGAGCTCAAACTCTCCTCCAATAATTTTTCTGGGCCACTTCCATTAGGCCTATTCAAATGTTTTAAGTTGCTTGTTCTGTCTCTAAATGACAATTCCGTGAATGGAACTCTCCCATCTGATATTGGTGAACTTGCGAACCTAAATGTCCTCAGACTTGAGCACAATAAGTTTTCTGGACCGATCCCTCTGGAGATAAGCAAATTGACCAAGCTTTATGAGCTCCGGCTCTCAAGAAATGGATTCAACGGTGAGATTCCAGCTGAGATTGGAAAACTTCAAAATCTCCAAATCATTTTAGACCTTAGTTACAATAATCTCTCAGGTCTCATCCCACTTTCTCTTGGGAAACAGTCAAAGTTAGAAGCTCTTGATCTTTCCCACAATCAACTAACTGGAGAAGTCCCTCCACAAATTGGGGAAATGAGCAGTTTGGGAAAGCTTGACCTCTCTTACAACAGCCTTCAAGGAAAATTGGATAAGCAGTTTTCCCGTTGGCCAGACCAGGCATTTGAAGGAAACATACATCTTTGTGGAAGCCCTCTTGGGAGCTGCCACAGAAATGACGACTCTGAAAATGCAGGCCTGAATGAATCAACAGTAGTGATAATCTCTTCCCTTTCAACTTTCGCTGCAATTGCACTTCTGATACTCGCAGTCCGAATCTTTTCCAAAAACAAGCAAGAATTTTGCAGGAAAGCCAGCGAAGTGAATTATGTTTACTCCTCTTCTTCATCACAAGCACAGAGAAGACCACTGTTCCAACTAAATGCAACGGGAAATAGAGATTTCAGATGGGAAGACATCATGGATGCTACGAACAATCTAAGTGAGGACTTCATGATTGGCTCAGGCGGCTCAGGGAAAATCTACAAAGCTGAATTGGCATCTGGAGAAACTGTGGCTGTCAAGAAGATTTCATCAAAAGATGAATTTCTGTTAAACAAAAGCTTCATAAGAGAAGTTAAGACACTGGGGAGGATTAGGCACAGACATCTGGTGAAGCTAATAGGATATTGTAGCAACAGAAACAAAGAAGCGGGTTGGAATCTGTTGATATATGAGTACATGGAGAATGGGAGTGTTTGGGATTGGCTTCACGGGAAACCAGCCAAGGAGAGCAAAGTAAAGAGGAGCCTTGATTGGGAGACAAGGTTCAAAATTGCTGTAGGATTAGCTCAAGGAGTGGAATACCTGCATCACGATTGCGTCCCAAAGATCCTTCACAGGGACATCAAATCCAGCAATGTATTGCTAGACTCAAAAATGGAGGCGCACTTGGGAGATTTTGGACTGGCAAAAGCACTAACCGAGAATTATGACTCTAATACCGACTCTAATTCTTGGTTTGCTGGCTCTTATGGCTACATAGCTCCAGAGTATGCATACTCCCAACAGGCAACAGAAAAAAGTGACGTTTACAGCATGGGAATAGTGCTGATGGAACTTGTTAGTGGTAAAATGCCAACAAATGAAATTTTTGGAGCTGAGATGAACATGGTGAGATGGGTAGAAATGAACGTGGATATGCATGGTTTTACCAGTGAGGAATTGATAGATCCTGAACTGAAACCTCTTTTACCTGACGAAGAGTTTGCTGCATTCAAAGTGCTTGAGATAGCCTTGCAATGCACGAAAGCTACACCACACGAGAGGCCATCTTCGAGGAAAGCATGCGACCTTCTCCTCCATGTATTCAACAACAGGATGCTGAACTTTGAGAAGATGAATTTGGAGCATTGCAAATGA 3822 0.4325 MPQIMRFSPLVVVLVFCFSPMLVVPGLGYSDHTTLGVLLEVKKSFVKDPRNVLSDWSEDNIEYCSWRGVSCELISDSNTISNSLDGNSMQVVGLNLSDSSLTGFVSPSLGRLQNLLHLDLSSNSLTGPIPPNLSNLTSLESLLLFSNQLTGHIPEEFGSLKSLRVMRLGDNALTGTIPASLANLVNLVNLGLASCGLTGSIPRQLGQLKLMENLILQDNELMGPIPTELGNCSSLTVFTAANNKLNGSIPSELGRLSNLQILNFANNSISGEIPSQLGNMSQLVYLNFMGNQFEGTIPPSLAQLGNLQNLDLSMNKLSGGIPEELGTLGELAYLVLSGNNLNGVIPRTICSNATSLEHLMLSESGLHGEIPGELNQCQQLMQLDLSNNALNGSIPLELYELLLLTDLLLNNNSLVGSISPSIGNLSGLQTLALFHNNLEGVLPREIGMLGKLEILYLYDNQLSGSIPTEIGNCSSLQMIDFFGNHFSGEIPVTIGRLKKLNFLHLRQNELVGEIPATLGNCHKLSILDLADNQLSGAIPATFGFLNELQQLMIYNNSLEGNLPHQLITVKNLTRVNLSKNRLNGSISALCSSQSFLSFDVTDNEFEGEIPSQMGNSPSLERLRLGNNNFSGEIPRTLGKIRELSLLDLSGNSLIGSIPAELSLCNKLAYIDLSSNFLFGQIPLWLGSLSQLGELKLSSNNFSGPLPLGLFKCFKLLVLSLNDNSVNGTLPSDIGELANLNVLRLEHNKFSGPIPLEISKLTKLYELRLSRNGFNGEIPAEIGKLQNLQIILDLSYNNLSGLIPLSLGKQSKLEALDLSHNQLTGEVPPQIGEMSSLGKLDLSYNSLQGKLDKQFSRWPDQAFEGNIHLCGSPLGSCHRNDDSENAGLNESTVVIISSLSTFAAIALLILAVRIFSKNKQEFCRKASEVNYVYSSSSSQAQRRPLFQLNATGNRDFRWEDIMDATNNLSEDFMIGSGGSGKIYKAELASGETVAVKKISSKDEFLLNKSFIREVKTLGRIRHRHLVKLIGYCSNRNKEAGWNLLIYEYMENGSVWDWLHGKPAKESKVKRSLDWETRFKIAVGLAQGVEYLHHDCVPKILHRDIKSSNVLLDSKMEAHLGDFGLAKALTENYDSNTDSNSWFAGSYGYIAPEYAYSQQATEKSDVYSMGIVLMELVSGKMPTNEIFGAEMNMVRWVEMNVDMHGFTSEELIDPELKPLLPDEEFAAFKVLEIALQCTKATPHERPSSRKACDLLLHVFNNRMLNFEKMNLEHCK* 1274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g1010 1273 SMART serkin_6 967 1258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1010 1273 Gene3D Ribonuclease Inhibitor 587 885 IPR032675 -
Vra7g1010 1273 ProSiteProfiles Protein kinase domain profile. 967 1258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1010 1273 Gene3D Ribonuclease Inhibitor 295 399 IPR032675 -
Vra7g1010 1273 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 7 1268 - -
Vra7g1010 1273 SMART LRR_typ_2 784 808 IPR003591 -
Vra7g1010 1273 SMART LRR_typ_2 136 159 IPR003591 -
Vra7g1010 1273 SMART LRR_typ_2 640 664 IPR003591 -
Vra7g1010 1273 SMART LRR_typ_2 328 352 IPR003591 -
Vra7g1010 1273 SMART LRR_typ_2 497 521 IPR003591 -
Vra7g1010 1273 SMART LRR_typ_2 833 864 IPR003591 -
Vra7g1010 1273 SMART LRR_typ_2 304 326 IPR003591 -
Vra7g1010 1273 SMART LRR_typ_2 736 760 IPR003591 -
Vra7g1010 1273 SMART LRR_typ_2 112 135 IPR003591 -
Vra7g1010 1273 SMART LRR_typ_2 425 448 IPR003591 -
Vra7g1010 1273 SMART LRR_typ_2 256 280 IPR003591 -
Vra7g1010 1273 SMART LRR_typ_2 449 473 IPR003591 -
Vra7g1010 1273 SMART LRR_typ_2 688 712 IPR003591 -
Vra7g1010 1273 SMART LRR_typ_2 160 184 IPR003591 -
Vra7g1010 1273 Pfam Protein kinase domain 972 1250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g1010 1273 Gene3D Ribonuclease Inhibitor 35 192 IPR032675 -
Vra7g1010 1273 ProSitePatterns Protein kinases ATP-binding region signature. 973 996 IPR017441 GO:0005524
Vra7g1010 1273 Pfam Leucine Rich Repeat 114 136 IPR001611 GO:0005515
Vra7g1010 1273 SUPERFAMILY L domain-like 350 677 - -
Vra7g1010 1273 PRINTS Leucine-rich repeat signature 812 825 - -
Vra7g1010 1273 PRINTS Leucine-rich repeat signature 833 846 - -
Vra7g1010 1273 Gene3D Ribonuclease Inhibitor 400 586 IPR032675 -
Vra7g1010 1273 Pfam Leucine rich repeat N-terminal domain 37 71 IPR013210 -
Vra7g1010 1273 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1098 1110 IPR008271 GO:0004672|GO:0006468
Vra7g1010 1273 Gene3D Transferase(Phosphotransferase) domain 1 1048 1270 - -
Vra7g1010 1273 SUPERFAMILY L domain-like 39 362 - -
Vra7g1010 1273 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 7 1268 - -
Vra7g1010 1273 Gene3D Phosphorylase Kinase; domain 1 926 1047 - -
Vra7g1010 1273 Gene3D Ribonuclease Inhibitor 193 294 IPR032675 -
Vra7g1010 1273 SUPERFAMILY Protein kinase-like (PK-like) 949 1253 IPR011009 -
Vra7g1010 1273 SUPERFAMILY RNI-like 598 848 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g1010 Vra-Chr7 24389690 24394776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g1010 37 710 Receptor kinase-like Gene Family AT1G17750 36.618 8.85e-101 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra7g1010 Pkinase 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g1010 - - gmx:100801889 2103.56