Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0984 ATGTTAGATAACAGTGCTTCTTCTGGTGCACCATCTTCTTCTGATGCCGCCTTTGCATTATCTGAAAATGGGGTGGCGAACAAAAGGAAAAGAAGACCCGCAGGCACACCCGATCCAGATGCTGAGGTTGTGTCTCTCTCACCCACCACCTTGCTGGAATCTGACAGATATGTGTGCGAGATCTGCAACCAAGGGTTCCAGAGGGACCAGAATCTTCAAATGCACAGGAGAAGACACAAGGTGCCATGGAAATTGCTCAAGAGGGAAACACAAGGGCAGAAGAAGAGAGTATTTGTCTGTCCAGAGCCAAGCTGTTTGCACCATGACCCTTGCCATGCCCTTGGGGATCTTGTGGGCATCAAGAAGCACTTCAGAAGGAAGCACAGCAATCACAAGCAGTGGGTCTGTGACAAGTGCTCCAAAGGGTATGCTGTTCAATCTGATTACAAGGCACACATCAAAACCTGTGGCACCAGGGGCCATTCCTGTGACTGTGGCCGTGTCTTTTCCAGGGTGGAGAGTTTCATAGAACACCAAGATGCATGCACTGTTCGGCAGCACCGGCCAGAGTTGCAAGCACTGCAACCTGCATGCTCTTCTAGAACTGCTTCAAGCGCAAGTCCCTCTAGTGAGGCAAATTTTAGCATCGCCCCACCATTGCAAGGACTTCCACTGCCAAAACCAGCTTCTGCTGATCAACCAGCAACAGTCTTATTAACTTCAGAGATACACAATAACAAGTCTACCACCTCTCGAAACTTAGAACTTCAGCTCTTACCCTCCTCAATAAATTCTCAAGAAAAACGAAATCCGAAGGAGAACTATGGTTTGAAACTTTCAATAGGGTCATGTAGTAATGACAAAGGGAATGAAGAGAGAGTGTGCTCAGAAACACATAGGAGCCAACCTGAAAGGAATAACAATGTGAGTGAGTATTCCACATTGGAAGTGGCGAGGTTGAAAGAGTTTGCAGCTGAGGAACTCAAGTTGGCCATGGCAGAAAAAGCTTATGCAGAAGAGGCTAGGAAAGAGGCCAAACGTCAGATTGAGATAGCTGAAATTGAGTTTGAGAATGCCAAAAGGATAAGGAAACAAGCACAATCTGAACTGGCAAAGGCTGAAGAGTTGAGAAAGCACGCCATGAAGAAGATAAGCTCCACTGTTTTGGAAATAACATGCCAAAGTTGCAAGCAACATTTCCAGTCTTCAACTCTTGGGGTTCCATCGGAAGAGACCTCCATTGTAATGAGTTACATGTCTTCAGCCACCACAGAAGGAGAAGCAGAATGA 1290 0.4659 MLDNSASSGAPSSSDAAFALSENGVANKRKRRPAGTPDPDAEVVSLSPTTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDACTVRQHRPELQALQPACSSRTASSASPSSEANFSIAPPLQGLPLPKPASADQPATVLLTSEIHNNKSTTSRNLELQLLPSSINSQEKRNPKENYGLKLSIGSCSNDKGNEERVCSETHRSQPERNNNVSEYSTLEVARLKEFAAEELKLAMAEKAYAEEARKEAKRQIEIAEIEFENAKRIRKQAQSELAKAEELRKHAMKKISSTVLEITCQSCKQHFQSSTLGVPSEETSIVMSYMSSATTEGEAE* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0984 429 MobiDBLite consensus disorder prediction 1 20 - -
Vra7g0984 429 Coils Coil 328 383 - -
Vra7g0984 429 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Vra7g0984 429 PANTHER OS03G0310200 PROTEIN 1 429 IPR039288 GO:0009630
Vra7g0984 429 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Vra7g0984 429 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 1 429 - -
Vra7g0984 429 MobiDBLite consensus disorder prediction 1 45 - -
Vra7g0984 429 MobiDBLite consensus disorder prediction 195 231 - -
Vra7g0984 429 MobiDBLite consensus disorder prediction 195 216 - -
Vra7g0984 429 Gene3D Classic Zinc Finger 35 100 - -
Vra7g0984 429 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Vra7g0984 429 Gene3D Classic Zinc Finger 119 196 - -
Vra7g0984 429 SMART c2h2final6 57 79 IPR013087 -
Vra7g0984 429 SMART c2h2final6 134 161 IPR013087 -
Vra7g0984 429 SMART c2h2final6 98 128 IPR013087 -
Vra7g0984 429 SUPERFAMILY beta-beta-alpha zinc fingers 54 80 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0984 Vra-Chr7 23730165 23733058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0984 22 429 C2H2 Transcription Factor Family AT2G01940 55.234 1.50e-154 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra7g0984 zf-C2H2 0.004 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0984 K25871 - gmx:100806138 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g0984 7 23730165 23733058 Vra7g0984 7 23730165 23733058 ECH