Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0971 ATGGGGCGTGGAAGGATACCCATGGATCTGATCGAGAAAGAGAAGGCTCGAAAGACAACATTTCAGAAGAGAAAGAACGGATTAATGAAGAAAGTTTACGAGTTTTCAACACTTTGTTCAGTTGACGTTGGTGTGATTATCTTTGCCTCAAAGTTTCTTGATGAACCTGAAATATGGCCACAAGAACCAAGAGAGTTGAAACGTGTGATTCAGAAATATCTGAACACTACCAGTGATAGGCGTCCAAAGGTGTATGATGTGGAAGAGTATTTCGATGAAAGGATGAAAAGGATTGAAGGAGAGATTTCCAAAGTGCACAAAGGGAAGATCCAACTCATGTATCCAACCTGGGATGACTCTTACAATACTCTTGAAGAGGAACAGTTGAGGATGTTTGTAAGCATTTTGGATGCTAAGCTTGATGCTTGTAATCATAGGATGAACATGTTCAAACGAGATTCAAAGGGAAAAGTAATAGAAGAATCAGACAATGATGAAGCACTTGTTCCTTACTTGGCTCCAACTTTAGGTAGTCACCTCAGTTTCATGCAGAACATGTCTCAAACACAGGTTTTTCCTACTAATGATAACAATCAAGTACCATTTTATCCATGTCATCTCAGCCAAACTTCTCTACCTTCTTTCTTTCAATTGGGTCAAAACTTTACCCAATTGATAGATAAAAATATAGCAGTGGATTGGAATAATCAAGTTGGTGCAATTGATCATAAAATGAATACGCAACAGGATGATAGAACAAACAAAAACCAAAATTCATCATCGTGCTATTACAATGCAAATATTCAAACAATGCAGCCGTATAATGATGTTGCTTTGCAAACTCTTCCTGTTCAATTGCAGTGCGATGCAACATTCCAGAGCCTGTCAAATCGACCAGGTCCATCACAAGGATTTGAACCTAATGATGTTTCTAATATGCTTCAACCTCATTTTCTAAACTATATGCACAGAAGAAAGTAG 981 0.3792 MGRGRIPMDLIEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPEIWPQEPRELKRVIQKYLNTTSDRRPKVYDVEEYFDERMKRIEGEISKVHKGKIQLMYPTWDDSYNTLEEEQLRMFVSILDAKLDACNHRMNMFKRDSKGKVIEESDNDEALVPYLAPTLGSHLSFMQNMSQTQVFPTNDNNQVPFYPCHLSQTSLPSFFQLGQNFTQLIDKNIAVDWNNQVGAIDHKMNTQQDDRTNKNQNSSSCYYNANIQTMQPYNDVALQTLPVQLQCDATFQSLSNRPGPSQGFEPNDVSNMLQPHFLNYMHRRK* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0971 326 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Vra7g0971 326 PANTHER MADS BOX PROTEIN 3 236 - -
Vra7g0971 326 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Vra7g0971 326 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Vra7g0971 326 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Vra7g0971 326 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 49 IPR002100 GO:0003677|GO:0046983
Vra7g0971 326 CDD MADS 2 51 - -
Vra7g0971 326 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 236 - -
Vra7g0971 326 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vra7g0971 326 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vra7g0971 326 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0971 Vra-Chr7 23302701 23303681 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0971 1 211 Type I MADS-box Gene Family AT5G55690 32.110 5.29e-23 94.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vra7g0971 SRF-TF 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0971 - - gmx:102660566 384.03