Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0965 ATGGACAGGGACAAGGACAAGGACAAGTCTCACACTCACAATTTTTTTCGCAGTTTCGTTAAACACTTCAAATTCGGTTCCAGTAAAGAGGGAAGCGATGAAGCTGACATACAGAAAATGGCTGCGCAAGAACAGAAGACTTTTGCCTACGAAACCTTGGCTTCTGTCACCAAGAATTTTAGTGATATTCACAAGCTAGGCGAGGGAGGCTTTGGCCCTGTCTACAAGGGTAAGCTGAATGATGGGAGAGAGATTGCTGTGAAGAAGTTATCACAGAGTTCAAATCAAGGGAAGAAAGAGTTCATGAACGAGGCCAAGTTGTTGGCTCGTGTGCAGCATCGGAATGTGGTGAATCTGGTGGGCTATTGTGTCCATGGCAACGAAAAGCTACTTGTTTATGAGTATGTTGCTCATGAAAGTCTAGACAAGTTTCTTTTCAAATCACAAAATAGAGAGAAGCTGGATTGGAAACGTAGGTTGGGCATAATCACAGGCGTGGCAAAGGGGTTACTTTATCTGCACGAAGACTCACACAATTGCATCATCCATCGTGACATCAAGGCCAGTAATATCTTGCTTGATGACAAATGGACGCCCAAGATTGCAGATTTTGGCATGGCACGTCTCTTCCCCGAAGATCAGACCCAAGTCAACACACGTGTGGCTGGAACCAATGGATACATGGCTCCAGAATATGTTATGCATGGAAATCTATCGGTGAAGGCAGATGTATTTAGTTATGGAGTTTTGGTATTGGAGTTGATCACCGGCCAAAGAAACTCCTCTTTCAATTTGGACGTGGACGCTCAGAGCATGCTTGATTGGGCATACAAGATGTACAAGAAAGGGAAGAGCTTAGAAATTGTGGATCCGACGTTGGCAGGTACAATGGTAGGTGAAGAGGTAGCGATGTGCATTCAGATGGGTTTGTTATGCACTCAAGGTGATCCACAGCTACGTCCCACGATGAGGCGTGTGGTGGTGATGCTGTCAAGGAAACCAGGCCAGATGCAAGAACCAACCAGACCAGGGGTGCCTGGTTCTAGATACAGAAGACCTCGAAGACACTCTGCATTGTCTTCCACATTGGGTACCTCAGGTGCCTCCGATTCACACACTTCTGATTCAAGTAATTATACGACTAGTGCCACTGGGACCAGCTATGCTACTGTTGAACCAGACCCCAAGGGTAAACGTCCAATGAGGGAGGGTTAA 1215 0.4617 MDRDKDKDKSHTHNFFRSFVKHFKFGSSKEGSDEADIQKMAAQEQKTFAYETLASVTKNFSDIHKLGEGGFGPVYKGKLNDGREIAVKKLSQSSNQGKKEFMNEAKLLARVQHRNVVNLVGYCVHGNEKLLVYEYVAHESLDKFLFKSQNREKLDWKRRLGIITGVAKGLLYLHEDSHNCIIHRDIKASNILLDDKWTPKIADFGMARLFPEDQTQVNTRVAGTNGYMAPEYVMHGNLSVKADVFSYGVLVLELITGQRNSSFNLDVDAQSMLDWAYKMYKKGKSLEIVDPTLAGTMVGEEVAMCIQMGLLCTQGDPQLRPTMRRVVVMLSRKPGQMQEPTRPGVPGSRYRRPRRHSALSSTLGTSGASDSHTSDSSNYTTSATGTSYATVEPDPKGKRPMREG* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0965 404 ProSiteProfiles Protein kinase domain profile. 60 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0965 404 Pfam Protein tyrosine and serine/threonine kinase 64 328 IPR001245 GO:0004672|GO:0006468
Vra7g0965 404 SMART serkin_6 60 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0965 404 MobiDBLite consensus disorder prediction 358 389 - -
Vra7g0965 404 PANTHER RECEPTOR-LIKE KINASE 11 378 - -
Vra7g0965 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Vra7g0965 404 MobiDBLite consensus disorder prediction 331 404 - -
Vra7g0965 404 Gene3D Phosphorylase Kinase; domain 1 22 135 - -
Vra7g0965 404 Gene3D Transferase(Phosphotransferase) domain 1 137 341 - -
Vra7g0965 404 CDD STKc_IRAK 66 332 - -
Vra7g0965 404 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 11 378 - -
Vra7g0965 404 SUPERFAMILY Protein kinase-like (PK-like) 45 344 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0965 Vra-Chr7 23015701 23020171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0965 48 344 Receptor kinase-like Gene Family AT4G11530 51.171 9.97e-110 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra7g0965 PK_Tyr_Ser-Thr 5.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0965 - - var:108347873 746.888