Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0961 ATGGGAGCACCAAAGACGAAGATAATGGGAGCAACACCAACTTGCGACGGCGACGCTGGTGGAGGAAGCCCTTCGGGAGGCAGAGATGGCGCGGCGGCGGAGGGCGCGACGGCAGAGGGCGCGACAGATGGCGGCAATGACGCGACGGCAAAGACGAAGATGGCGCAGCGAAGACCAAGATTGGAACAAGAAACGCAAATATCGTCCAATTCAGCAGCTATTGAAAATTCAGAAGTGAGCTTCTTATTCCTTGCATCGGTGTTCTTGGTCTTGGTGGCATCAATCAGTTCCCAAGAAGAGAACAAACACGAAGAGTGTAGCAAGCCATTCAGCTGCGGACTAACGTCCATCTACTACCCTTTCTGGGGAGGGAGCAGACCCAGTTATTGTGCTAGCAACCGCCAATTCAAGCTCAACTGTGAGGATAATCAAAACTCCACCCTTCAACTTGGCTCACAAACTTTTCAAGTTCTTCACTTTGATCCAGTTCAGTACACCGTGAAAGTGGTTCGAACAGGCCTTGTCTATGATAATTGCTCTTCCTCAGCCGTAACCAACAACTCCGTGGATTCAAATCTCTTTAGATACCTGAATGTTAGGAACATCACCATCTACTATGGTTGTCCCTATTCCCTGATTTCAAACAGCACACGCTCTTTTCAATGCAAGGAAGATGGTAACAAGAGTGCTTTCTATGGGGACCCTGCAACTGGGAAAGTCCAAGACTGTGATGGAGCTAGGATTGAAGTGCAAGTAGCACAGGAACTTGACCCTGATGGGGGAATTCAAGGACTCAACAAAGCCTTGAGTGAAGGGTTTGAAATACATCTTATTTCAGAGGCACAAGTTCACCAGTGCTTAAAATGCGTTTCGACTAATGGAACATGTGGGGCTAATAATGAGTCTCAGTTTTCATGTTTTTGCCCCAATGGAAGTGAAGGTTTAGATTGCTCTAATAGCGATAAATGGAACTGGAGAAGGAAGCTGGTTATAGGTGTTGCTGCTGCAGTGATAAGTGGAATTGTATTTAGCCTTGGCTTTTACATCTATTATGGTCGCCTAAAGAAGAAGAATCATCATCTCCGTGAAGTAACATCTTCTGTAGTATATAATTCTAAAGGAATCTCACATAGTTCTTGTTTAGAAGATTATGAGAAGGGAAATAAATACATTGGAGTCCACTTCTTCACCTATAGTGAACTTGAAGAGGCCACAAACTTCTTTAATCCAGACAGAGAACTAGGAGACGGAGGATTTGGAAAAGTGTATTTTGGGAAACTTCAGGATGGACGATTAGTGGCAGTGAAGAGAATGTACGAGAACAGTTTGAAAAGAGTTGAGCAATTCGTGAATGAAGTGGAAATCTTAACTGGCCTACACCACCAGAACCTTGTGTCTCTATATGGATGCACTCCTCGCCACAGTAGAGAACTTCTGCTGGTGTACGAATACATTCCAAATGGAACCGTGGCTGATCATCTTCATGGTCAAAGAGCAAAACCTGGCACACTCCCTTGGCACATCAGAATGAACATTGCCATTGAAACTGCAAGTGCATTGGTATATCTCCACGCTTCTGATATCATCCACAGAGACGTAAAAACCAGCAACATTCTCCTTGACAACCACTTCAGTGTCAAAGTAGCAGATTTTGGCCTCTCACGTCCCTTCCCAATCCATGCCACACACGTTTCCACTGCCCCACAAGGAACTCCTGGTTATGTGGATCCAGAGTATCACGAGTACTACCAGCTCACTGATAAGAGTGATGTTTATAGCTTCGGGGTGGTGCTGATCGAGCTCATATCTTCCATGCATGCGGTTGATATCTCTAGGCGTAGACATGAGATCAACTTGTCCAACATGGCCATCAAGAAGATCCAAAGTGGTGCGTTGCATGAGATTGTGGATCCAACTCTAGGGTTTGAGTCGGATTTCAAGGTCAGGAAAATGATCAGTGCAGTGGCTGAGTTGGCGTTTCAGTGCTTGCAGAGTTCCAAAGATGTAAGGCCTACTATGGCACAAGTGCTGGATAGACTTGAGGATATAAGAAGTGATGGGAAGTATAAAAGCAAGCATGAGGTGCTGGATATATCAGAAGATGATACTGCTTTGTTAAAGATTGAACCTCCTCCTCCTTCACCTGATTCAAATTTTCAAACTGTACGTAGTATTGTTAACTAG 2184 0.4496 MGAPKTKIMGATPTCDGDAGGGSPSGGRDGAAAEGATAEGATDGGNDATAKTKMAQRRPRLEQETQISSNSAAIENSEVSFLFLASVFLVLVASISSQEENKHEECSKPFSCGLTSIYYPFWGGSRPSYCASNRQFKLNCEDNQNSTLQLGSQTFQVLHFDPVQYTVKVVRTGLVYDNCSSSAVTNNSVDSNLFRYLNVRNITIYYGCPYSLISNSTRSFQCKEDGNKSAFYGDPATGKVQDCDGARIEVQVAQELDPDGGIQGLNKALSEGFEIHLISEAQVHQCLKCVSTNGTCGANNESQFSCFCPNGSEGLDCSNSDKWNWRRKLVIGVAAAVISGIVFSLGFYIYYGRLKKKNHHLREVTSSVVYNSKGISHSSCLEDYEKGNKYIGVHFFTYSELEEATNFFNPDRELGDGGFGKVYFGKLQDGRLVAVKRMYENSLKRVEQFVNEVEILTGLHHQNLVSLYGCTPRHSRELLLVYEYIPNGTVADHLHGQRAKPGTLPWHIRMNIAIETASALVYLHASDIIHRDVKTSNILLDNHFSVKVADFGLSRPFPIHATHVSTAPQGTPGYVDPEYHEYYQLTDKSDVYSFGVVLIELISSMHAVDISRRRHEINLSNMAIKKIQSGALHEIVDPTLGFESDFKVRKMISAVAELAFQCLQSSKDVRPTMAQVLDRLEDIRSDGKYKSKHEVLDISEDDTALLKIEPPPPSPDSNFQTVRSIVN* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0961 727 MobiDBLite consensus disorder prediction 708 727 - -
Vra7g0961 727 SMART serkin_6 408 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0961 727 Gene3D Transferase(Phosphotransferase) domain 1 485 697 - -
Vra7g0961 727 Gene3D Phosphorylase Kinase; domain 1 381 484 - -
Vra7g0961 727 ProSitePatterns Protein kinases ATP-binding region signature. 414 436 IPR017441 GO:0005524
Vra7g0961 727 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 82 719 IPR044652 -
Vra7g0961 727 ProSitePatterns EGF-like domain signature 1. 306 317 IPR000742 -
Vra7g0961 727 Pfam Wall-associated receptor kinase galacturonan-binding 106 171 IPR025287 GO:0030247
Vra7g0961 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672|GO:0006468
Vra7g0961 727 Pfam Protein kinase domain 410 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0961 727 MobiDBLite consensus disorder prediction 1 69 - -
Vra7g0961 727 ProSiteProfiles Protein kinase domain profile. 408 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0961 727 SUPERFAMILY Protein kinase-like (PK-like) 388 681 IPR011009 -
Vra7g0961 727 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 82 719 - -
Vra7g0961 727 Pfam Wall-associated receptor kinase C-terminal 240 310 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0961 Vra-Chr7 22910651 22917335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0961 108 716 Receptor kinase-like Gene Family AT1G25390 43.182 3.78e-145 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vra7g0961 Pkinase 2.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0961 - - vra:106766190 1413.67