Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0959 ATGATTGGAAGTAAAGATCGAGTTGCTGAATCGGAGGGTGAGAACTCTAGGAGCAAGCTTTCAAGGCACTATTTTGGGGCAAACAAGGAGTACCCAGATGAGAAAGGTGTTTTATTTCTGAGAGATTCACAGATGGGTGGTGGTGGAGGTGTTGATGGGGTTCTTCGTCCAAAACCCACCGAGGTTGTTGTTGGAAGCTCGGGGTTCCAAGAGTTGACCCTCAGCTACCTTTGTGACAACCCAAAAATCAGTTTTTCTGAGAAAGAGAATCCTGGTAAAAGCTTGCTGAGTTCCTTTGAGAGAATAAGCAACAAAGGGAAAGAGGTTGTGGTTTGTGAGAACTCAAATCAGGATGGAAAATGGGTGGAAAGAGATTTCCTCAGCTTGAGTGAGCCAAGAGAGGATTCTTCAAAGAGATCCCTTGAGGAAGTTGTTGAGAGGGAGAGTAATAAGGAGAAGAAGCAAAAACTGGAGACCCTCAATCTCTCTCTTGCTTTGCCTGATGTTTCACTTTCCCTCACTGCTTCAAACGCCTTGCAAAATGGTGATCAACTAGTTAGGAATAAACCTTGTAGGCCATCCACTACTCACACTTCATACTCCAATGACTACACAGCAGCCTCTTTGTCTTACTCTTATTCCCACCCGTTCTCTCACAACCCAAGCTGCTCACTAACCCGCAATTCAACCGATAATTTTGAGTACTCGGTGAGCAAAGATGACCAAATTTGGAACTGTGGGGAGGGGACCAATGGGTCTGTGCATAGTAGGTTCAAGCCAATAGGAGATGGGGTTGCTTTGACCAGCCATGGTGCTGGTATTAGTTCCTTTATGCAAGGTAATAGTCAGTATAAAACTACTAGTTCAGATAACCATTCTTTTTTCCCTTCAGAGTTGCCTGCCAGGCCAAGGCTTGAGGCTCAGTCTGGGGACTCAAGGGGTAGGAACTCTGATAACCTGAGAATCTTGGATGGCTTGGATGATGGGAAGGTAAGGAAGCATTCCAGGCCAGAGAGAATTATTAGGGAGATTGTTTCAGAGTCTATCACTGTCATGGCATTGACAATTCAGGAGCTTACTGATGATGTCATAGCATCAACTAAGGAATACTTAAAGAATCTCATTGAGAAGCCTGACAAGAAAGAGGAACTGGTAAGCCTCCAAAACCGGCTTGATAGAAGATCTGACCTAACAAAGGAGAGTCTTTCAAAGTGCCACAAAGTACAGTTAGAGGTTTTAGTGGCTCTCAAGATGGGGCTTGCTAGCTTCCTATCTAGCAAAGTTCAGTTGTCTGAGATGGTAGAGATTTTCTTGTACAAGAGATGTAGGAATGTAACCTGCATGAGTTTGCTTCCTGTTGATGATTGTGACTGCAAGATTTGCTCAGGAAATAAGGGCTTTTGTAGTTCTTGCATGTGTCCTGTCTGTTTGAACTTTGATTGTGCAAATAGCACTTGTAGTTGGATAGGATGTGATGTTTGTTCTCATTGGTGCCATGCTACCTGTGGCATTCAGAGAAATCTTATCAAGCCTGGACCTAGCTTGAAGGGTCCATCAGGGACCTCAGAGGTGCAGTTTCATTGTCTCGGATGTGGACATGCCTCGGAAATGTTTGGTTTTGTAAAAGACGTGTTTCTGTATTGTGCAAAGGATTGGGGACTTGAAACCTTGATGAAAGAGCTTGACTGTGTAAGGAGGATCTTCAGGGCAAGTGAAGATCGCAAAGGGAAGGAATTGCATGTTAAAACTGATGACTTGCTATTAAAGCTTCAAACTAAAATGGTATCTCCTTCGGACGCTTGCAATTACATCGTACAATTTTTCAACTACGCAGACAGCATCTTAGATTTTCCTGCTTCGGCTGGTATTTCTTCAAAGGATTTGGCAGCCTCTCAAAGTAACCTTACAAAGGATATACCATCTCTTTCAAAAGCTAACCCTCTATTACCAAATTATGGTTATGAGATGGGCTATTCTAGGTCACACCCTGATGCCATGTCAAGTGAAGTACTTCAGAAAGACCTCAAAGCTTCCATGTTGAGTGAACTGAAAAACGAGGCTGATTTCCATTTGGGGGCTTTATTAAGAAAAGGTGGACTTGAAAGTTTGGGGAGCATTGTGAGGATAAAGGAGGCAGAAGCCAGAATGTTTCAAACCAAGGCAGATGAAGCAAGAAGAGAGGCAGAAGGGTTCCAGAGGATGATCAGGACAAAGACTGCCCAGATGGAAGAGGAGTATGCTGAAAAGCTTTCCAAACTCTGCTTGCACGAGACTGAGGAAACACAGAGGAAGAAAATGGATGAACTCAAAGTCTTGGAAAATTCCTATTTTGATTACTATAAAATGAAAAAGAGAATGCAAGAAGAGATTGATGGTTTGTTGCGGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAG 2418 0.4334 MIGSKDRVAESEGENSRSKLSRHYFGANKEYPDEKGVLFLRDSQMGGGGGVDGVLRPKPTEVVVGSSGFQELTLSYLCDNPKISFSEKENPGKSLLSSFERISNKGKEVVVCENSNQDGKWVERDFLSLSEPREDSSKRSLEEVVERESNKEKKQKLETLNLSLALPDVSLSLTASNALQNGDQLVRNKPCRPSTTHTSYSNDYTAASLSYSYSHPFSHNPSCSLTRNSTDNFEYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVALTSHGAGISSFMQGNSQYKTTSSDNHSFFPSELPARPRLEAQSGDSRGRNSDNLRILDGLDDGKVRKHSRPERIIREIVSESITVMALTIQELTDDVIASTKEYLKNLIEKPDKKEELVSLQNRLDRRSDLTKESLSKCHKVQLEVLVALKMGLASFLSSKVQLSEMVEIFLYKRCRNVTCMSLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCANSTCSWIGCDVCSHWCHATCGIQRNLIKPGPSLKGPSGTSEVQFHCLGCGHASEMFGFVKDVFLYCAKDWGLETLMKELDCVRRIFRASEDRKGKELHVKTDDLLLKLQTKMVSPSDACNYIVQFFNYADSILDFPASAGISSKDLAASQSNLTKDIPSLSKANPLLPNYGYEMGYSRSHPDAMSSEVLQKDLKASMLSELKNEADFHLGALLRKGGLESLGSIVRIKEAEARMFQTKADEARREAEGFQRMIRTKTAQMEEEYAEKLSKLCLHETEETQRKKMDELKVLENSYFDYYKMKKRMQEEIDGLLRRMEATKQQWV* 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0959 805 Coils Coil 707 741 - -
Vra7g0959 805 PANTHER PROTEIN OBERON 3 1 805 - -
Vra7g0959 805 Pfam Coiled-coil region of Oberon 666 794 IPR032535 -
Vra7g0959 805 Coils Coil 138 158 - -
Vra7g0959 805 MobiDBLite consensus disorder prediction 132 153 - -
Vra7g0959 805 MobiDBLite consensus disorder prediction 280 295 - -
Vra7g0959 805 MobiDBLite consensus disorder prediction 1 23 - -
Vra7g0959 805 Coils Coil 755 775 - -
Vra7g0959 805 MobiDBLite consensus disorder prediction 280 321 - -
Vra7g0959 805 Coils Coil 783 803 - -
Vra7g0959 805 Pfam PHD - plant homeodomain finger protein 442 566 IPR032881 -
Vra7g0959 805 CDD PHD_OBE1_like 472 531 - -
Vra7g0959 805 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 805 IPR004082 -
Vra7g0959 805 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 355 377 IPR004082 -
Vra7g0959 805 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 394 409 IPR004082 -
Vra7g0959 805 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 433 454 IPR004082 -
Vra7g0959 805 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 479 499 IPR004082 -
Vra7g0959 805 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 552 571 IPR004082 -
Vra7g0959 805 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 701 721 IPR004082 -
Vra7g0959 805 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 740 762 IPR004082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0959 Vra-Chr7 22758650 22762903 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0959 442 539 PHD Gene Family AT5G57380 28.571 2.38e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0959 - - gmx:100820216 1415.98