Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0925 ATGAAACTTTCATCAGCAGGTTTTAGTCCTCCACCCCAAGAAGGAGAAAAGCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCACTTGTTTCTTTACCAGCTGTTGGAAGCCGTGTAGTATATTTTCCACAAGGTCACAGTGAACAGGTTGCTGTGTCTACCAACAGGGAGGTGGATGGCCATATACCAAATTATCCAAGTTTACCGCCTCAGCTTATTTGTCAACTTCATAACGTGACTATGCATGCAGATAATGAGACTGATGAAGTATATGCTCAGATGACTTTGCAACCTATGAGTCCTCAAGAGCAGAAAGAGGCATACCTTCCAGCGGAGTTAGGCACTCCAAGTAAACAGCCAACAAACTACTTTTGCAAAATTCTGACTGCCAGTGACACCAGCACTCATGGTGGATTTTCTGTTCCTCGTAGGGCAGCTGAAAAAGTTTTTCCTCCTTTGGACTTTTCACAACAGCCTCCCGCTCAAGAGTTAATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGAGGTCAGCCTAAAAGGCATCTACTCACCACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGGCTTGTTGCTGGTGATTCAGTTCTGTTTATCTGGAATGAAAAGAATCAATTGCTTCTTGGCATTCGGCGCGCTAATCGTCCTCAACCTGTGATGCCTTCATCAGTCTTGTCTAGTGATAGTATGCACTTAGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCGACTAGCAGCCGTTTCACCATCTTTTATAACCCACGAGCTAGCCCATCAGAATTTGTTATACCTTTAGCAAAGTATGTTAAAGCTGTATATCATACTCGTGTGTCTGTCGGTATGCGCTTCAGGATGCTGTTTGAAACAGAGGAATCCAGTATCCGTCGATACATGGGCACAATAACTGGCATTAGTGACCTGGACTCTGTTCGGTGGCCAAATTCTCATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACAGCAGGAGAGAGGCAACCCCGGGTTTCTTTATGGGAAATTGAGCCATTAACAACATTTCCAATGTATCCATCTCCATTCCCCCTTAGGCTCAAGAGACCATGGCCTCCAGGAATGCCTTCATTCCATGCAGGCTTGAAAGATGACGATTTTGGTTTAAATTCTTCACTAATGTGGCTTCGAGACACAGACAGAGGTATTCCATCTCTTAATTTTCCGGGGATTGGTGTTAGTCCTTGGATGCAGCCAAGGCTTGATCCCTCAATGGTGAATTATCAAACAGACGTATACCAAGCTATGGCTGCCGCCGCACTTCAGGATATGTGGAGTTCAGATCCTTCCAAACAACATCCTACTTCCTTACTCCAATTTCAGCAACCACAGAACTTCCTGAATAGGACTTCTCCCTCAGTGCAGACTCAGATCTTGCAGCAATCTCAATCTCAGCAATCGTTTCCAAATAGTCAAGAAATACCACATCCATCTCAATCTCAGGCTCAGACTCTAACACATTTTCAGCAGCATTTGCAGCATCAGCATTCATTCAATAATCAGAATCAGCATCATCTTCTACAACAGCAACAACAACAACAACAACAGCAACAATCACAACAACCACAGCAGCAACAACTGCAGCAGCAACAAGTGGTTGATCATCAGCAGATTTCAAGTGCTGTCTCTACAATGTCTCAGTTTGTTTCAGCACCTCAATCCCAATCCCCACCCATGCAAGCTATCTCTTCACTGGGACATCAGCAGAGTTTTTCTGATTCAAACGGGAACCCTGTAACTAATGCTATTGTTTCTCCCCTGCATAGTATTTTGGGTTCATTTCCCCATGATGAAACATCTCACCTTCTCAATCTTCCTAGAACCTCATGGGTTCCTGTTCAATCTTCAACTGCATGGCCACCCTCCAAACGTGTTGCAGTGGATCCTCTCCTTCCTTCTGGGGCATCTCAATGTGTTCTGCCTCAACTGGAACAGTTAGGGCAACCACAGAGTACCATGGCTCAAAATGCAATTACATTGCCACCCTTTCCTAGTAGGGAGTGTGCTATAGAAGGAAGCAGTGATCCGCAAAATCATCTTTTGTTTGGAGTAAATATAGAGCCCTCATCACTGCTAATGCATAATGGGTTGTCAAGCCTCAAGGGAGTTAGCAGCAACTGTGGCCCACCAACTTTACCTTTCCAATCATCTAATTACCTGAATACCACAAGCACTGATTCTTCAATGAATCCTGGAATGACACACAATATTGGTGAATCGGGCTTCCTGCAAACCCCAGAAAATGGAGGGCAAGGAAACCCACCGATCAAAACCTTTGTAAAGGTTTACAAGTCGGGGTCCTTTGGAAGATCATTGGATATTACAAAATTCACCAGCTACCATGAGCTACGCGGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGTGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCAAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCATGGCCGGAATTTGTAAATAGTGTAGGGTGCATCAAGATACTTTCCCCTCAGGAAGTGCAGCAAATGGGAAACAATGGCCTTGAACTTCTTAACTCAGTCCCAATCCAGAGGCTCTCTAATGGCGTGTGTGATGACTATGCAGGCCATGAGGACCCAAGAAGTATTAGCACTGGGATAACAACTGTGGGTTCTTTAAACTACTGA 2751 0.4518 MKLSSAGFSPPPQEGEKRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNREVDGHIPNYPSLPPQLICQLHNVTMHADNETDEVYAQMTLQPMSPQEQKEAYLPAELGTPSKQPTNYFCKILTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQPVMPSSVLSSDSMHLGLLAAAAHAAATSSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSIRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGMPSFHAGLKDDDFGLNSSLMWLRDTDRGIPSLNFPGIGVSPWMQPRLDPSMVNYQTDVYQAMAAAALQDMWSSDPSKQHPTSLLQFQQPQNFLNRTSPSVQTQILQQSQSQQSFPNSQEIPHPSQSQAQTLTHFQQHLQHQHSFNNQNQHHLLQQQQQQQQQQQSQQPQQQQLQQQQVVDHQQISSAVSTMSQFVSAPQSQSPPMQAISSLGHQQSFSDSNGNPVTNAIVSPLHSILGSFPHDETSHLLNLPRTSWVPVQSSTAWPPSKRVAVDPLLPSGASQCVLPQLEQLGQPQSTMAQNAITLPPFPSRECAIEGSSDPQNHLLFGVNIEPSSLLMHNGLSSLKGVSSNCGPPTLPFQSSNYLNTTSTDSSMNPGMTHNIGESGFLQTPENGGQGNPPIKTFVKVYKSGSFGRSLDITKFTSYHELRGELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVGCIKILSPQEVQQMGNNGLELLNSVPIQRLSNGVCDDYAGHEDPRSISTGITTVGSLNY* 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0925 916 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Vra7g0925 916 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 896 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vra7g0925 916 Pfam AUX/IAA family 780 868 IPR033389 -
Vra7g0925 916 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Vra7g0925 916 SMART B3_2 127 229 IPR003340 GO:0003677
Vra7g0925 916 Gene3D - 125 228 IPR015300 -
Vra7g0925 916 SUPERFAMILY CAD & PB1 domains 782 859 - -
Vra7g0925 916 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Vra7g0925 916 Gene3D - 291 363 - -
Vra7g0925 916 ProSiteProfiles PB1 domain profile. 783 867 IPR000270 GO:0005515
Vra7g0925 916 PANTHER AUXIN RESPONSE FACTOR 1 896 - -
Vra7g0925 916 Gene3D - 780 872 - -
Vra7g0925 916 CDD B3_DNA 126 227 IPR003340 GO:0003677
Vra7g0925 916 MobiDBLite consensus disorder prediction 477 558 - -
Vra7g0925 916 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0925 Vra-Chr7 20943279 20952611 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0925 1 484 B3 DNA Binding Superfamily AT1G30330 84.049 0.0 817
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vra7g0925 AUX_IAA 3.1e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0925 - - vun:114176727 1684.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g0925 7 20943279 20952611 Vra7g0925 7 20943279 20952611 ECH
Vra2g1483 2 22800247 22807168 Vra7g0925 7 20943279 20952611 PCT