Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0895 ATGAATGTTGCTGAGGTTGAAGAAAATCTAGTTGCCGCAACTGATGCTAAGTTACATGGACAAATGTGCAAGACTCTTTCTATAATATATTGCAAAGTATTGTCTGTATTTCCTTCTTTAGAAGCTGCCAGGCCTAGGAGTAAATCTGGTATTCAGGCATTATGTTCATTGCATGTAGCCTTGGAGAAAGTCAAGAATGTTCTTCAGCACTGCGCAGAGTGTAGTAAACTTTACTTGGCTATAACTGCTGATTCCGTCCTCCTAAAATTTGAGAAGGCTAAATCTGCTCTTGAAGATAGTCTTAGACGAGTGGAAGAAATTGTTCCACTATCTATTGGGTGTCAGGTTCAGGAGATTGTGCACGAGTTTGTGACAATAGAATTTGCACTTGACCCAGCAGAAAAGCAAGTTGGCAATGATTTGATTGCATTGCTCCAACAGGGGAGAAAGTTTAATGATTCTAGTGACAGCAATGAGCTTGAATGTTTCCACCAGGCTGCTACTAGACTCGGAATTACATCTTCAAGAGCAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAACTCCTAGAAAGGGCTCGATCAGAGGAAGACAGGCGGAAGGAATCAATTATTGCATATCTCTTGCATCTTATGAGGAAATACTCCAAATTATTTAGAAGTGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCACTGTTCAGGGATCTATTGAGGACAGTGTTCCTGGTAGTCATTGTCAAGCCTTTGACAGACAGCTTTCAAAATTCAGTTGCTTTAATTTTAAACCAAATAGTGGTAGGAAATCAGGGCAGATGCCTCTTCCACCTGAAGAGTTAAGGTGTCCTATATCTCTGCAACTTATGTATGATCCTGTTATCATTGCTTCTGGGCAAACATATGAAAGAGTTTGCATAGAGAAATGGTTCAGTGATGGGCACAACAACTGCCCAAAGACCCAGCAGGAACTTTCACATCTTTCTTTAACTCCTAATTACTGTGTTAAGGGCCTTGTTACTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGAAGGCCCTCCTGAATCTCTCGACCTTAATTACTGGCAGTTATTATCAGAGTCTGAATCTACAAGTTCAAAAGCTGTAAATAGTGTTAGCTCTTGCAAGTTGAAGGGTGTTGAAGCGGTTCCTTTGGAAGAGAGTGGTATCTCAGAGGAATCTGTGGAAAAGGGAACTGAAAGTGTGTCTGCCCAAGAGGAAGACATAGAGCAGTGTTTTAGCTTTCTGAAAGTTTTGACTGAGGGGAATAATTGGAGTAAGCAATGTGAAGTGGTAGAACAGTTAAGGTTTCTGCTGAGAGATGACGAGGAAGCCCGGATATTTATGGGGGCTAATGGGTTTGTTGAAGCACTTGTGCACTTCCTTCGATTAGCTGTGCATGAAGGTAGTTTGATGGCTGTGGAAAGTGGAACAATGGCTCTCTTCAACCTGGCCGTGAATAATAACAGAAATAAGGAAATTATGTTATCAGCTGGAGTATTATCATTGTTGGAAGAGATGATTTCAAAAACTAGTTCTTATGGTTGCATTACCGCTCTTTATTTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCAATGATTGGCATGAGTCAGGCTATCCAGTTCCTAATCCAGCTTCTCCAATCTGACTCCGATGTTCAATGCAAGCAAGATGCTCTCCATGCTCTCTATAATCTTTCTACTATGGCCTCCAATATTCAACACCTCCTTTCATCTGGCATCATTAGTGGCTTACAGTTCCTTCTTGAAGGAGACACTGATTGCTTGTGGACAGAGAGATGCATAGCTGTTTTGATAAATTTAGCTGCTTTTGATGTTGGAAGGGAGGAAATTGAATCAACTCCTGGACTCATTAGTGCACTGGCTTCTATACTGGACACTGATGAGCTCTTGGAACAGGAGCAAGCAGTCTCTTGTCTCCTAATTTTGTGCAATAGAAGTGAAGAGTGTTGTGACATGGTCTTGCAAGAAGGGGTTATACCAGCATTGGTTTCAATATCAGTGAATGGGACCCCAAGAGGCAGAGAAAAAGCTCAGAAACTGTTGATGCTGTTCCGAGAGCAGCGGCGGGACCATTCACCAGTTAAGACACATCAGTGCCCACCTGAAACTGCTGATTTGTCTATGCCTCCAGCTGAAATGAAACCGCTATGCAAGTCAATTTCAAGAAGAAAGTCTGGGAGAGCTTTTAGCTTTTTCTGGAAAAGCAAGACCTATTCTGTCTACCAGTGCTGA 2292 0.4206 MNVAEVEENLVAATDAKLHGQMCKTLSIIYCKVLSVFPSLEAARPRSKSGIQALCSLHVALEKVKNVLQHCAECSKLYLAITADSVLLKFEKAKSALEDSLRRVEEIVPLSIGCQVQEIVHEFVTIEFALDPAEKQVGNDLIALLQQGRKFNDSSDSNELECFHQAATRLGITSSRAALAERRALKKLLERARSEEDRRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPTVQGSIEDSVPGSHCQAFDRQLSKFSCFNFKPNSGRKSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQELSHLSLTPNYCVKGLVTSWCEQNGVPIPEGPPESLDLNYWQLLSESESTSSKAVNSVSSCKLKGVEAVPLEESGISEESVEKGTESVSAQEEDIEQCFSFLKVLTEGNNWSKQCEVVEQLRFLLRDDEEARIFMGANGFVEALVHFLRLAVHEGSLMAVESGTMALFNLAVNNNRNKEIMLSAGVLSLLEEMISKTSSYGCITALYLNLSCLEEAKPMIGMSQAIQFLIQLLQSDSDVQCKQDALHALYNLSTMASNIQHLLSSGIISGLQFLLEGDTDCLWTERCIAVLINLAAFDVGREEIESTPGLISALASILDTDELLEQEQAVSCLLILCNRSEECCDMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQRRDHSPVKTHQCPPETADLSMPPAEMKPLCKSISRRKSGRAFSFFWKSKTYSVYQC* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0895 763 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 748 - -
Vra7g0895 763 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Vra7g0895 763 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Vra7g0895 763 Coils Coil 175 195 - -
Vra7g0895 763 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Vra7g0895 763 Gene3D - 408 529 IPR011989 -
Vra7g0895 763 Gene3D - 530 629 IPR011989 -
Vra7g0895 763 Coils Coil 87 107 - -
Vra7g0895 763 Gene3D - 630 703 IPR011989 -
Vra7g0895 763 PANTHER U BOX DOMAIN-CONTAINING 1 748 - -
Vra7g0895 763 SUPERFAMILY RING/U-box 279 355 - -
Vra7g0895 763 CDD RING-Ubox_PUB 284 326 IPR045210 -
Vra7g0895 763 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Vra7g0895 763 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Vra7g0895 763 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 550 593 IPR000225 GO:0005515
Vra7g0895 763 SUPERFAMILY ARM repeat 427 704 IPR016024 -
Vra7g0895 763 SMART arm_5 539 580 IPR000225 GO:0005515
Vra7g0895 763 SMART arm_5 454 498 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0895 Vra-Chr7 19809422 19814272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0895 1 762 U-box Gene Family AT1G24330 65.039 0.0 1007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0895 - - gmx:100794099 1320.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra2g1408 2 22260987 22265994 Vra7g0895 7 19809422 19814272 PCT