Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0880 ATGAATTTCCCATCAAAAAATCCTCTAGCACTCCCAACAATTTGGCTCTCCTATTTTTTACTCCTTTCCTTTGTTCTCATTACATGTTGCCAAGTTGAGGCTACAGATGGAGACAGTAAAGTCATATCTGTAGGTGCAATAATTGATGTTAACTCCCGCATTGGGAAAGAACAGCTTGTGGCCATGGAACTTGCAGCTCAAAGTTATAATACCACTTCTAACACCTACAAGCTGCTTCTTCAATTTCAGCTTCCCACCAAGGATCCCTTCATACCCACTTCCTTTGCTAGAAGAATGATTAAAACGCAGAAGATGCAAGTGATTATAGGGATGCAGACATGGACAGAAGCAGCTTCAGTGGCTGAATTAGGACGTAAATCTCAAGTTCCTGTCATATCCTTTGCAGCTCCTTCCATTAGCCCATTATTGATGCCAATTCGCTGGCCTTCCTTGGTAAGAATGGCTCACAATGGCACTGCATATGCAAAATGTGTTGCAGATATGGTGCATGCTTTTAATTGGCAGAGAGTAGTAGTGATTTATGAAGATGGAGACTATGAGATGCTAGCACTGCTATCAGAGACCCTCCAAGATGTTGGTTCAAAGATCGAGTATCGTTTGGCTCTTCCATCTCCTTCTTATCTTTCTAATCCTAGAGAATTCATTCACCAAGAGTTGTTCAAGGTGATTGAAAATACACAGTCCAGGGTGTTCATTGTTCTGCAATCATCATTAGAAATGGTGATTCATTTGTTCAGAGAAGCTTCAGAAATGGGACTTGTGGATGGAGAATCAGCTTGGATAATCCCAGAGAGCACGACTAATTTGCTTGATTCTGTCAACAAGTCTGCTATTTCCTACATGCGAGGAGCTTTAGGAATCAAGACCTACTACTCTGAACGTAGCAGTGAATATCAAAACTTTGAGGCTCGGTTCAGAAAATCTTTTCGTGCCAGGTATCCTGAGGAGGATAACAGCAACCCGGGATTCTATGCTCTGCAAGCACATGATAGCATTAAAATTGTTGCACAAGCAATAGATAGAATGGCGAGTGGCAGAAAGAGTCTGCTAAGAGAAATACTTTCTAGCAATTTCGTTGGCTTAAGTGGAGAAATTCGATTCGAAGAAGCGCAACTCTTGCAGAATCCCACTTTCATGATTGTTAATGTAGATACAAAGAGTTACAGAGAGTTAGACTTTTGGACTCCAGAAGGGGGGTTCATGAGTAGCCTTCCTACAGAACAAGGTTCAGAGAGTGTTTCTAGGAACACACAAAGTTTAAGTGGCATTGTAATATGGCCAGGGAAACTAACAAGAATTCCAAAGGGCTGGAATCTGCCTACTAAACAAAAACCAATGAGAATAGCGGTTCCTGGAAGAACCTCCTTTTCCAAGTTTGTCAAGGTTGATCATGACAAGCTTACAAATTCATCTAAGTACACCGGATTCTGCATTGAAATTTTTGAGAAGGCGTTACCCCTATTGGGATATGACCTGCCATATGACTTCCATCCCGTGAATGCAACCTATCCTGATCTGGTTCAATTGGTCTATAATAAGACTTATGATGCTGTTGTTGGAGACGTGACGATATTAGAAGAAAGATTGCGATATGTAGATTTTACGGTGCCATATGCAGAATCGGGGTTGTCAATGATAGTTACGGAGAAGTTGGAAGATTCGACATGGATGTTTATGAAGCCCTTCACCTGGCAAATGTGGGTGGCGACTGGTGCCTTGTTGCTGTACACAATGGTAGTTGTTTGGTGCCTGGAGCGGAAACCCAATCCAGATTTTCATGGCAATTTGAAAAGCCAGATCAGCACTGCGCTTATGTTTACCTTCTCCTCTCTATTTTTCGCTCATAGGGAGAAAATTTATAGTGACTTAACTCGAGTGGTGATGGTATCATGGCTGTTTCTAGTTTTGATTCTTAACTCAAGCTACACTGCTAGTCTTTCTTCCATGCTCACAGTTCAACGACTGCGACCAAATGTGACTGATATTGAGTTTCTGAAGAAGAACAACATGAAAATTGGTTGTGACGGTGACTCGTTTGTTAAGGCATACCTAGAGGAAGTCGAAGACTTCAAGCCAGAGAACATCATACACATTAATAATGAATATAGTTATGAGGGTGCATTCAAAAATAACTCAATAGCAGCTGCTTTTCTCGAACTACCCTATGAAAAAGTATATATGAGTAAATATTGCAAGGGATACTCTGCCTTTGTACCTACCACCAAATTCGGAGGTCTGGGATTTATGTTCCAGAAAGGCTCCCCAGTGGCCAGAGACTTTTCCAGAGCTATACTGAGGCTCTTAGAGCAGGGAGACATAAAGAAGTTAGAAGACAAATGGTTGAACTCTGCAGATGAGTGCTCAAACAATTCGACCTCTGAGAGTTCAGAAAGTTTGAGGCTCGGAAGTTTCTGGGTTCTGTACGTGATTTCTGGTGCCACTTCTACTATTTGTTTTCTACTCTACACCATCCAGTCACGGAAATCCAGTCACACATCCCAAGATGAGGCAGAAGAACGTAACGGCAACCTTAGTGATGAAAGCCGATGGAAAAGGATGTTTGTTATAGCCAGGCAGATCTACACCAGAAAGCATGCATCACTTACACACGACCATCAGCAGGCTATGGCTCCACAATTACCAGAGATCATAATGGTGTCTTCCCCACCAACGGTTACTATTCACAACTCTTGA 2715 0.4203 MNFPSKNPLALPTIWLSYFLLLSFVLITCCQVEATDGDSKVISVGAIIDVNSRIGKEQLVAMELAAQSYNTTSNTYKLLLQFQLPTKDPFIPTSFARRMIKTQKMQVIIGMQTWTEAASVAELGRKSQVPVISFAAPSISPLLMPIRWPSLVRMAHNGTAYAKCVADMVHAFNWQRVVVIYEDGDYEMLALLSETLQDVGSKIEYRLALPSPSYLSNPREFIHQELFKVIENTQSRVFIVLQSSLEMVIHLFREASEMGLVDGESAWIIPESTTNLLDSVNKSAISYMRGALGIKTYYSERSSEYQNFEARFRKSFRARYPEEDNSNPGFYALQAHDSIKIVAQAIDRMASGRKSLLREILSSNFVGLSGEIRFEEAQLLQNPTFMIVNVDTKSYRELDFWTPEGGFMSSLPTEQGSESVSRNTQSLSGIVIWPGKLTRIPKGWNLPTKQKPMRIAVPGRTSFSKFVKVDHDKLTNSSKYTGFCIEIFEKALPLLGYDLPYDFHPVNATYPDLVQLVYNKTYDAVVGDVTILEERLRYVDFTVPYAESGLSMIVTEKLEDSTWMFMKPFTWQMWVATGALLLYTMVVVWCLERKPNPDFHGNLKSQISTALMFTFSSLFFAHREKIYSDLTRVVMVSWLFLVLILNSSYTASLSSMLTVQRLRPNVTDIEFLKKNNMKIGCDGDSFVKAYLEEVEDFKPENIIHINNEYSYEGAFKNNSIAAAFLELPYEKVYMSKYCKGYSAFVPTTKFGGLGFMFQKGSPVARDFSRAILRLLEQGDIKKLEDKWLNSADECSNNSTSESSESLRLGSFWVLYVISGATSTICFLLYTIQSRKSSHTSQDEAEERNGNLSDESRWKRMFVIARQIYTRKHASLTHDHQQAMAPQLPEIIMVSSPPTVTIHNS* 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0880 904 Gene3D - 340 456 - -
Vra7g0880 904 PANTHER GLUTAMATE RECEPTOR 3.4 22 874 - -
Vra7g0880 904 PIRSF IGluLR_plant 13 355 IPR017103 -
Vra7g0880 904 PIRSF IGluLR_plant 348 890 IPR017103 -
Vra7g0880 904 SUPERFAMILY Periplasmic binding protein-like I 39 444 IPR028082 -
Vra7g0880 904 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 22 874 - -
Vra7g0880 904 SMART GluR_14 454 790 IPR001320 GO:0015276|GO:0016020
Vra7g0880 904 CDD PBP1_GABAb_receptor_plant 43 411 IPR044440 -
Vra7g0880 904 SUPERFAMILY Periplasmic binding protein-like II 428 789 - -
Vra7g0880 904 CDD GluR_Plant 451 788 - -
Vra7g0880 904 Gene3D - 159 327 - -
Vra7g0880 904 Gene3D - 562 696 - -
Vra7g0880 904 Pfam Ligand-gated ion channel 790 819 IPR001320 GO:0015276|GO:0016020
Vra7g0880 904 Gene3D - 733 796 - -
Vra7g0880 904 Gene3D - 461 561 - -
Vra7g0880 904 Pfam Bacterial extracellular solute-binding proteins, family 3 477 789 IPR001638 -
Vra7g0880 904 Pfam Receptor family ligand binding region 60 391 IPR001828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0880 Vra-Chr7 19084707 19088831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0880 7 845 Ion Channels AT2G29120 33.258 2.82e-144 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0880 - - gmx:100780320 1435.62