Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0874 ATGTCTTCTTCCAATAAACACTGGCCAAGCATGTTCAAATCCAAGCCTTGCAATTCCCACAACCAATGGCAGCATGGCAACAACTCTTCTGTCCTGTCCACTGGATGCCAAAGAAGCCCTTATACTCCAGGAAATGAAGAGAAAACTCCAGAACCAAAGTCAAGATGGAATCCAAAACCCGAGCAAATTCGCATTCTAGAAGCCATCTTCAATTCTGGGATGGTGAATCCCCCAAGGGATGAGATAAGGAAGATCCGGGTGCAGTTGCAGGAGTATGGCCAAGTTGGTGATGCCAATGTGTTCTATTGGTTCCAGAATCGCAAATCCAGGAGCAAGAACAAGCTCCGCCACATCCAAAACTCAAAGAACCACAACACAGAAACGCAAGCAAACTTACTTTCTCTCTCTCAAATCATACCACCTTCAACCTCATCCTCTTCCTCTGACAAATCCTCCTCAAAAGAATTAGTGCACCCAAATGCCATCTCCTTTGGCTTCTCAAATGTCAATGATGCACTGCCTAATTCTCCCACTGCTTCTGTGAATCAGACTTATTTACAGTCTCACAACTACAATAACACCGCTTTGCTGCCACCAGTGATCGAGTCTTTCTCCTTTCCTTTGCACAATAATGGTCAAGGTGTAATAGTTAACGATACCATCACAACGCATGGGTTTTCTATCCCTCAGTTCTCCAACAATATAATGCAATCTCAACCACAATGTGAACCAAAGGTTGGACACAGCAGTAGTCTTTTTCTCAACGAGATCATGAGCCACGGAACTTTCTCAAAGAAAGACCAAGATCAGGAAAAGGCATTAAAATCAATGCACCGTCAACAACTTAGCTCCCCTCCGACTTCATCTTCAACCACAACCGTTGCTCACGAAATCTCAACTCTTCCATGTCCAATCACCCAGCTTCAAGGTGTTGGTGGTGAGGTTACAGCAGATAGAGAAAAATGTATAGTTTTCATTAACGATGTTGCATTTGAGGTAATGATGGGACCCTTCAACGTGCGCCAAGCCTTCGGAGATGAAGCCGTGCTTATCCACTCTTCCGGCCCTGTCCCCACCGATGACTGGGGCATTACCCTCCACCCACTGCAGCATGGTGCTTACTATTATCTGATATAA 1137 0.4503 MSSSNKHWPSMFKSKPCNSHNQWQHGNNSSVLSTGCQRSPYTPGNEEKTPEPKSRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKNKLRHIQNSKNHNTETQANLLSLSQIIPPSTSSSSSDKSSSKELVHPNAISFGFSNVNDALPNSPTASVNQTYLQSHNYNNTALLPPVIESFSFPLHNNGQGVIVNDTITTHGFSIPQFSNNIMQSQPQCEPKVGHSSSLFLNEIMSHGTFSKKDQDQEKALKSMHRQQLSSPPTSSSTTTVAHEISTLPCPITQLQGVGGEVTADREKCIVFINDVAFEVMMGPFNVRQAFGDEAVLIHSSGPVPTDDWGITLHPLQHGAYYYLI* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0874 378 MobiDBLite consensus disorder prediction 264 293 - -
Vra7g0874 378 ProSiteProfiles 'Homeobox' domain profile. 49 114 IPR001356 GO:0003677
Vra7g0874 378 SUPERFAMILY Homeodomain-like 47 117 IPR009057 -
Vra7g0874 378 Pfam Homeodomain 53 113 IPR001356 GO:0003677
Vra7g0874 378 MobiDBLite consensus disorder prediction 277 293 - -
Vra7g0874 378 Gene3D - 53 118 - -
Vra7g0874 378 CDD homeodomain 52 114 IPR001356 GO:0003677
Vra7g0874 378 MobiDBLite consensus disorder prediction 1 44 - -
Vra7g0874 378 MobiDBLite consensus disorder prediction 1 60 - -
Vra7g0874 378 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 378 - -
Vra7g0874 378 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 378 IPR044557 GO:0003700|GO:0050793
Vra7g0874 378 SMART HOX_1 51 118 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0874 Vra-Chr7 18922912 18925577 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0874 1 378 Wox Gene Family AT2G33880 41.784 5.03e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vra7g0874 Homeodomain 3.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0874 - - gmx:100777643 520.39