Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0871 ATGGGAGTGTTCGTAGGGACACAAACTGAGAGAGAAGAGAAGGTGTCTTTGGAGCTCAGCGAAGAAATTCTTCAGAGTATGGAAGTAGGAATGGCCTTCAAAGACAATAATGGTAGAATTAGTTCCTTGGACTTTCACAGGACATCCAGTTATCTAGTAACTGCCAGTGATGATGAATCCATTCGACTGTATGAGGTTACCAGTGGAACTTGTTTGAAGATAATTAATAGCAAAAAGTCTGGGGTTGACCTCGTTTGCTTCACATCTCATCCTACAACTGTCATATACTCTTCGAAAAATGGTTGGGATGAATCTTTGCGGTATTTCAAAGGTCACCATGATAGGGTTGTGTCACTAAGCTTGTGCTCTCGGAAGGACTGCTTTATATCTGGTTGTCTAGATAGAACTGTTTTACTATGGGATCAAAGGGCTGAAAAGTGCCAGGGACTGTTACATGTAAAAGGAAGACCTGCTATATCATATGACGATCAAGGACTTGTGTTTACAGTTGCCTTTGGAGGATTTGTAAGAATGTTTGATGCTCGCAAGTATGAAAAGGGTCCCTTTGAGATATTTTCCGTTGGGGGAGATACTTCTGATGCAAATGTTGTGAAATTTAGTAATGATGGGAGTCTCATTCTTTTAACAACGGCGGATGGGCATATTCACGTGCTTGACTCATTTCGCAGACACTTGTTATTATCCACATATAATGTCACGCCTGTCTCATGCAACTCCACATTAGAAGCTTCTTTCAGCCCCGAGGGAATGTTTGTAATATTTGGTTCTGGGGATGGAAGCATCTATGCGTGGAGTGTTCGAAGTGGCAAAGAAGTTGCAAGTTGGAGGAGTGCAACTTCTGATACCGGACCTCCTGTAATAAAGTGGGCTCCTGGAAGTCTAATGTTTACTACTGGATCATCTGAGTTGTCATTCTGGATTCCAGATTTGTCTAAGTTGGGATCCTATGTTGGAAGAAAGTAG 984 0.4197 MGVFVGTQTEREEKVSLELSEEILQSMEVGMAFKDNNGRISSLDFHRTSSYLVTASDDESIRLYEVTSGTCLKIINSKKSGVDLVCFTSHPTTVIYSSKNGWDESLRYFKGHHDRVVSLSLCSRKDCFISGCLDRTVLLWDQRAEKCQGLLHVKGRPAISYDDQGLVFTVAFGGFVRMFDARKYEKGPFEIFSVGGDTSDANVVKFSNDGSLILLTTADGHIHVLDSFRRHLLLSTYNVTPVSCNSTLEASFSPEGMFVIFGSGDGSIYAWSVRSGKEVASWRSATSDTGPPVIKWAPGSLMFTTGSSELSFWIPDLSKLGSYVGRK* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0871 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 33 69 - -
Vra7g0871 327 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 326 - -
Vra7g0871 327 PANTHER WD40 REPEAT PROTEIN SWD2 6 326 IPR037867 GO:0048188
Vra7g0871 327 Gene3D - 18 102 IPR015943 GO:0005515
Vra7g0871 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 109 141 IPR001680 GO:0005515
Vra7g0871 327 Pfam WD domain, G-beta repeat 106 141 IPR001680 GO:0005515
Vra7g0871 327 Pfam WD domain, G-beta repeat 38 64 IPR001680 GO:0005515
Vra7g0871 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 33 74 IPR001680 GO:0005515
Vra7g0871 327 ProSiteProfiles Trp-Asp (WD) repeats profile. 251 281 IPR001680 GO:0005515
Vra7g0871 327 Gene3D - 103 319 IPR015943 GO:0005515
Vra7g0871 327 SMART WD40_4 26 65 IPR001680 GO:0005515
Vra7g0871 327 SMART WD40_4 241 272 IPR001680 GO:0005515
Vra7g0871 327 SMART WD40_4 102 141 IPR001680 GO:0005515
Vra7g0871 327 SMART WD40_4 187 226 IPR001680 GO:0005515
Vra7g0871 327 SUPERFAMILY WD40 repeat-like 33 314 IPR036322 GO:0005515
Vra7g0871 327 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 109 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0871 Vra-Chr7 18722840 18739724 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0871 33 225 U-box Gene Family AT1G04510 23.786 3.13e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0871 K14962 - gmx:100810444 591.652