LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra7g0866	ATGGCTTTCTTCTCCTCTTCTTTATGCTCTAATCAAACCCAGAAACAAACATATTTTTTCATATGTATCATCTACTTCTTCACTTTGTTCCATAACACTGTAGATTCAGTTTCCTTCAACTTTTCCAGCTTCCAGCAGTCAAACTTAAAAAACCAAATAAACTTCACGGGTGATGCTTTTCCCTCAAACGGTGTTCTTCAGCTCACGAAGAACCAACTCGATGGCCCCATCACAGATAGCGTTGGTCGAGCCTCGTACGAACAACCAGTGAGGATTTGGGATAAAAAAACAAAGAAGCTCACCGATTTCACAACCCACTTCTCTTTTGTCATGAGAGCTGTGGACCAGTCATTTGTTGGTGATGGCTTAGCCTTCTTCCTTGCACCCTTTGATTCTTCCATTCCCAACAATTCCTCTGGTGGGTTCCTTGGCCTGTTCAGCCCGGATTCCGCATTCGACACGAAGAAAAATCAGATGGTGGCAGTTGAGTTCGACAGTTTCAAGAATGAATGGGATCCGAGCTCAGACCACGTAGGGATCAATGTAAATTCCATTCAATCAGTTGCAAACGTCACTTGGAAGAGCAACATTAAGAACGGGTCTGTTGCTAATGCTTGGGTATGGTACAACTCCACATCCAAAACTCTATCTGTCTTCCTTAGCTATGCTGAAAATCCAACCTTCAATGGCAGTTCCAGTCTTTCTTACGTTATTGATTTGAGGGACGTGTTGCCAGAGTTTGTTAGAATAGGCTTTTCTGCAGCAACGGGAACATGGGTTGAGATACACAATATTTTGCTTTGGTCATTCAGTTCAACCTTGGATGAACGTGGTAGGAAAAAGGTCAAGGTTGGCTTAGTGGTTGGTGTAAGTGTTGGTTTGGGTTGTTTAGCTTGTGCTGCAGGTCTAATATGGTTTACCTTTTGGAGAAGGAGAAATAGACTAAGGGGTGTAAACGAGGACGAAATTGGTGTTGATGCCATAGATGATGAGTTTGAGAGAGGAACAGGTCCAAAGAGGTTCACCTACCGAGAACTAAGCAACGCAACCAACAACTTCGCTGAAGAAGGGAAGCTAGGACAAGGAGGGTTTGGAGGAGTTTACAAAGGTTTGATTGTGAATTCCAACCTTGAAGTGGCAGTGAAGAGGGTTTCGAAAGGGTCAAAGCAAGGGAAAAAGGAGTACATATCAGAAGTGACAGTAATCAGCCGTCTGAGACACAGAAACCTGGTTCAACTCATAGGGTGGTGCCATGAACAAGGTGAGCTCCTTCTTGTATATGAATTCATGCCAAACGGAAGCCTTGATTCTCATCTGTTTGGAAATAGAGTCATGCTTTCGTGGGTGGTGAGATACAAGGTGGCCATAGGTTTGGCATCTGCACTCCTTTATCTTCATGAAGAGTGGGAACAGTGTGTGGTCCATAGAGATATCAAGTCAAGCAACGTAATGTTGGATGCTAATTTCAATGCAAAGCTTGGTGACTTTGGCCTTGCAAGGCTGGTAGACCACGAACTAGGTTCACAAACGACTGTTTTGGCAGGCACCATGGGGTATCTAGCCCCAGAGTGTGTGACCACAGGGAAATCAAGCAAGGAATCTGATGTGTACAGCTTTGGTGTTGTGGCACTTGAGATCGCATGTGGTAGAAAACCAGTGGAGGTGAAAGAAGAGGCTGGTAAAATTAGGCTTGTGGAGTGGGTGTGGAACCTCTACGGAAAAGGGAAAGTACTAGAAGCAGCTGATGAGAAACTGAATCGAGAATTTGAAGAACAGCAAATGGAATGCTTGATGGTTGTGGGGTTGTGGTGCTGTCACCCTGATCATACCATGAGGCCCTCCATTAGGCAAGTGATAAGTGTGCTTAACTTTGAAGCCCCTTTGCCAAGTCTTCCATCGAAGTTGCCAGTGCCAATGTACTTTGCACCTCCCGTGGAGATTACCCAGTTCTCCTACTCTTCATCTGCCGTCACAAACACAACCAAAGATTCCTCCCCGTACTCCTCAATTTCTACTGGGTCCCGAAAGTCTCCCTTGTACCAATAA	2046	0.4487	MAFFSSSLCSNQTQKQTYFFICIIYFFTLFHNTVDSVSFNFSSFQQSNLKNQINFTGDAFPSNGVLQLTKNQLDGPITDSVGRASYEQPVRIWDKKTKKLTDFTTHFSFVMRAVDQSFVGDGLAFFLAPFDSSIPNNSSGGFLGLFSPDSAFDTKKNQMVAVEFDSFKNEWDPSSDHVGINVNSIQSVANVTWKSNIKNGSVANAWVWYNSTSKTLSVFLSYAENPTFNGSSSLSYVIDLRDVLPEFVRIGFSAATGTWVEIHNILLWSFSSTLDERGRKKVKVGLVVGVSVGLGCLACAAGLIWFTFWRRRNRLRGVNEDEIGVDAIDDEFERGTGPKRFTYRELSNATNNFAEEGKLGQGGFGGVYKGLIVNSNLEVAVKRVSKGSKQGKKEYISEVTVISRLRHRNLVQLIGWCHEQGELLLVYEFMPNGSLDSHLFGNRVMLSWVVRYKVAIGLASALLYLHEEWEQCVVHRDIKSSNVMLDANFNAKLGDFGLARLVDHELGSQTTVLAGTMGYLAPECVTTGKSSKESDVYSFGVVALEIACGRKPVEVKEEAGKIRLVEWVWNLYGKGKVLEAADEKLNREFEEQQMECLMVVGLWCCHPDHTMRPSIRQVISVLNFEAPLPSLPSKLPVPMYFAPPVEITQFSYSSSAVTNTTKDSSPYSSISTGSRKSPLYQ*	682

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra7g0866	681	SUPERFAMILY	Concanavalin A-like lectins/glucanases	35	274	IPR013320	-
	Vra7g0866	681	MobiDBLite	consensus disorder prediction	657	681	-	-
	Vra7g0866	681	PANTHER	-	25	654	-	-
	Vra7g0866	681	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	473	485	IPR008271	GO:0004672\|GO:0006468
	Vra7g0866	681	Gene3D	Transferase(Phosphotransferase) domain 1	430	643	-	-
	Vra7g0866	681	ProSitePatterns	Legume lectins alpha-chain signature.	244	253	IPR000985	-
	Vra7g0866	681	ProSiteProfiles	Protein kinase domain profile.	353	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra7g0866	681	ProSitePatterns	Protein kinases ATP-binding region signature.	359	382	IPR017441	GO:0005524
	Vra7g0866	681	Pfam	Protein kinase domain	354	619	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra7g0866	681	Gene3D	-	34	287	-	-
	Vra7g0866	681	Gene3D	Phosphorylase Kinase; domain 1	338	429	-	-
	Vra7g0866	681	CDD	lectin_legume_LecRK_Arcelin_ConA	37	274	IPR001220	GO:0030246
	Vra7g0866	681	PANTHER	RECEPTOR LECTIN KINASE	25	654	-	-
	Vra7g0866	681	SUPERFAMILY	Protein kinase-like (PK-like)	337	654	IPR011009	-
	Vra7g0866	681	SMART	serkin_6	353	622	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra7g0866	681	CDD	STKc_IRAK	367	623	-	-
	Vra7g0866	681	ProSitePatterns	Legume lectins beta-chain signature.	160	166	IPR019825	-
	Vra7g0866	681	Pfam	Legume lectin domain	37	277	IPR001220	GO:0030246

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra7g0866	Vra-Chr7	18353515	18355647	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra7g0866	23	640	Receptor kinase-like Gene Family	AT5G10530	51.177	0.0	601

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vra7g0866		Pkinase	1.4e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra7g0866	-		-	pvu:PHAVU_003G287100g	1196.42