Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0865 ATGAAGGGGAGGAGCCAAAGGGTTTTCTTTCTTTTCTGGTTTGGAATGACCCTGCGCTTGTTTTTCTTACTCGGTGCCTGTTCCGAGAAGACAACAAGAAAAGCTATGAGGCAAAACCACTCCACTCAACAGACAACTTCTAATCCTGGGATCATTCTGAATACAAAGAACAGTCAACAGGTGGTGGTTGACAATGGCATTGTTTCCGTTAATTTTTCAAGACCTAAGGGTTACGTCCTTGGAATGTCATACAAAGGAATTGACAATATACTCGAAGACGATAACGAAGAACAAGATAGAGGGTACCTTGATGTCGTTTGGAATACGCCACAATCGAAGAATAGTACTTTTGAGAGAATCTTCGGGACAAATTTTACGGTTATAGCATCTGACGACAATTTCGTTGAGCTCTCATTTTTAAGAACATGGACATCGTCCATGAATGGCTCGAGTGTCCCAATGAACATTGACATAAGATACATTTTGCGAAGTGGTGATTCCGGATTTTATGCATATGCGATATTTAATCGTCCTGAAGGATGGCCTGCGGTGGAGATTGACCAAATTAGGATCGTTTTCAAACTCAAATCCAGATTCAACTATATGGCAATAACGAATGAAAGGCAAAGATACATGCCAACGAAGAAAGATAGAGAAACTGGTCAAGAATTGGCATACCCTGAAGCAGTTCTGTTAACGAAACCAGTGAATCAAGAATTTAGAGGAGAGGTGGATGACAAATACCAGTACGCATGTGAAAACAAGGACAACACTGTTCATGGATGGGTGACTGCTGATGCCAATGACCCCGTGGGTTTCTGGATGATAACCCCAAGCAACGAGTTCCGCAATGGTGGCCCCACCAAGCAAGACCTTACTTCACATGTTGGCCCCATTACCCTCGCGATGTTTGTGAGCACTCACTATGCTGGGAAGGAGGTAACCATGTCCTTTCAAGAAGGGGAAGCTTACAAAAAAGTTTTCGGCCCTGTGTTCGTCTACGTTAACTCTGCTTCAGGCGAGGATGGTACACTATCCCTCTGGTCAGACGCTGTTCAGCAGCAAGCCAAAGAAGTCAGAAGTTGGCCGTATGAATTTCCTAAATCAGTGGATTTCATTCCACCCAGTCAAAGGGGAATAGTTTTAGGAAGATTACTAGTGAAAGATAGTTACTACAGAGGAGGTAAACATGTGTATGCTGACAATGCTTACGTTGGTCTAGCTTTACCTGGAGAAACAGGGTCATGGGAAAAAGAAAGCAAGGGCTATCAGTTCTGGACTCAAGCTGATACAAAGGGTTTTTTCCTGATAAATAATATTGTGCCCGGTGACTATAATTTGTATGCATGGGTTCCTGGCTTCATTGGTGATTACAGATATAATGTTACAATCAACATCAAAAAGGGAGGAGTCATCACATTGGATTCACTTGTGTTTGTTCCACCAAGAAGTGGACCAACCTTGTGGGAAATTGGGTTCCCAGATCGCACGGCTGCAGAATTCTATATACCGGACCCTTACCCTACGCTCATGAATAAATTATACAACAAAAAGCCCAATCAGAAGTTTAGAAATTATGGGTTGTGGGATCGTTACACTGATTTATATCCAAATAATGATCTTGTTTTCACTGTTGGTGTAAGCAACTATAACAAGGATTGGTTTTTCGCTCACGTTTCAAGAAACGCAGGAAACAAGACATACCAGCCAACGACATGGCAGATTGTATTTGAACATCCAAATGAAGTAGTAAAAGGAAACTACACATTGCAACTGGCCTTGGCATGTACCAGTGATGCTAACCTGCAGATTCGTTTCAATAACGCTGGAGCAAAAAACCCAGACTTTGGAACTGGGAAAATAGGAGCAGATAGTGCCATAGCAAGGCATGGTGTGCATGGATTGCATAGGCTATTCAGCATCAGTGTAAAAAGTGATCGAATTGTGAAAGGAAAGAACACGATCTATTTGAAGCAGGCAAGAGCCAAGAATGCTTATCAAGGAGTAATGTATGATTATATCCGTTTAGAAGGACCTCCATCGACAGGGAAATGA 2055 0.4229 MKGRSQRVFFLFWFGMTLRLFFLLGACSEKTTRKAMRQNHSTQQTTSNPGIILNTKNSQQVVVDNGIVSVNFSRPKGYVLGMSYKGIDNILEDDNEEQDRGYLDVVWNTPQSKNSTFERIFGTNFTVIASDDNFVELSFLRTWTSSMNGSSVPMNIDIRYILRSGDSGFYAYAIFNRPEGWPAVEIDQIRIVFKLKSRFNYMAITNERQRYMPTKKDRETGQELAYPEAVLLTKPVNQEFRGEVDDKYQYACENKDNTVHGWVTADANDPVGFWMITPSNEFRNGGPTKQDLTSHVGPITLAMFVSTHYAGKEVTMSFQEGEAYKKVFGPVFVYVNSASGEDGTLSLWSDAVQQQAKEVRSWPYEFPKSVDFIPPSQRGIVLGRLLVKDSYYRGGKHVYADNAYVGLALPGETGSWEKESKGYQFWTQADTKGFFLINNIVPGDYNLYAWVPGFIGDYRYNVTINIKKGGVITLDSLVFVPPRSGPTLWEIGFPDRTAAEFYIPDPYPTLMNKLYNKKPNQKFRNYGLWDRYTDLYPNNDLVFTVGVSNYNKDWFFAHVSRNAGNKTYQPTTWQIVFEHPNEVVKGNYTLQLALACTSDANLQIRFNNAGAKNPDFGTGKIGADSAIARHGVHGLHRLFSISVKSDRIVKGKNTIYLKQARAKNAYQGVMYDYIRLEGPPSTGK* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0865 684 CDD RGL4_N 54 342 - -
Vra7g0865 684 CDD RGL4_M 377 477 IPR029413 -
Vra7g0865 684 Pfam Rhamnogalacturonate lyase family 43 244 IPR010325 -
Vra7g0865 684 SUPERFAMILY Galactose-binding domain-like 484 677 IPR008979 -
Vra7g0865 684 SUPERFAMILY Starch-binding domain-like 373 476 IPR013784 GO:0030246
Vra7g0865 684 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 54 681 - -
Vra7g0865 684 Gene3D - 373 476 - -
Vra7g0865 684 Gene3D - 53 350 IPR014718 GO:0030246
Vra7g0865 684 Pfam Polysaccharide lyase family 4, domain II 401 473 IPR029413 -
Vra7g0865 684 Pfam Polysaccharide lyase family 4, domain III 487 676 IPR029411 -
Vra7g0865 684 SUPERFAMILY Galactose mutarotase-like 54 339 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vra7g0865 684 CDD RGL4_C 489 677 - -
Vra7g0865 684 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 54 681 - -
Vra7g0865 684 Gene3D - 484 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0865 Vra-Chr7 18309716 18314841 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0865 60 679 Polysaccharide Lyase AT1G09890 54.487 0.0 697
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0865 K18195 - gmx:100776664 1122.46