Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0864 ATGCGACAGAAGAAGCAGAGGGCGAGGTGGGGGAGGTCGTTCTGGGCGAAGGCAGAGATGACGGAGCTCCATGTGGTGGCAGATTTGTGGGGAAAGGAATCAAAGAGTTTGTGCGAGGAGAGTTTAAGTGAGTTCAAAGGTTCCGACGTAGCATTTAATAATCCTGAAGTCAAATTGCATATAGAAAAGAAGCAGATCACCGTGCAAAATGGCATCATTCGTGTAACTTTCTCAAATCCGGAGGGCACCATCCTTGGAATATCATATAATGGAATAAACAATGTGCTTGAAGGTCGCAATAACTTCAACAACAGAGGAAATCCTCGTCTTTGCAGGTATTTTGACATTGTCTGGAATTCACCTGGAGCCCCTTCAAAACTTTGGGGAATTGAAGGGAGTAGATTTTCAGTTATAGAGGCCAACGAGAATGAAGTAGAACTTTCGTTTTCCAGAACGTGGAACAAGGACAACTCAAGTCCCCCTTTAAACATAGACAAAAGATATATTTTACGAAGAGGTAGTTCAGGATTATACATATATGGTATATTTGAGCATCCTGAAGATTTTCCTGCAACCGAGATTGATCACGTTAGGATTGTTTTCAAGCTGCAGAAGGAGAGGTTCCAGTACATGGCTATAGCAGATGATAGGCAGCGACTCATGCCAACAGCAGAAGATAGATCTACTGGGCAACGCCTTGATTATGATGAAGCTGCTCTAATCACCAATCCTAGTAACCCTAAACTTCGAGGAGAGGTTGATGACAAATATCAATACTCTTGTGAGAACAAAGACAACAAAGTTCATGGGTGGATTAACTTGGACTCCAAGACAAACAAGTCAGTGGGCTTTTGGATGATCACACCAAGTAATGAGTTTCGTAGTGGTGGCCCAATTAGGCAAGGCCTTACTTCTCATGTTGGCCCTGTCACCCTTAATATACTCCATACCACTCACTACTCTGGAAAGGAAGTAACCATGACATTACACGAAGGGGAACCCTTCAAGAAAGTATATGGTCCCGTTTTTGCTTATCTTAACTCAGTTTCAAGGGTTCATCATTCAGAACAAGTCCTCTGGAGTGATGCTGTACAACAGCTATCAGAGGAAATCAATAGATGGCCTTATGATTTCCCTAAATCAGAGGATTTTGTCCCTACAAATAAAAGGGGAAGAGTGGAAGGACAATTATTCGTTCAAGACAGACACATTAAAGGAGGGAATTTTTTATATGGCGAAAATGCCCACATTGGTTTGGCAGTTCCTGGAGATGTTGGATCATGGCAGAGACAAAGCAAGGGTTACCAATTCTGGACTCAAGCTGATAAACTTGGCCATTTCACTATAGAAAATATTGTACCAGGGGACTACAATTTATATGCATGGATTCCTGGAATTTTTGGAGACTATAGATATAACACTACCATAACCATAACATCAGGATGTATCGTCCAATTGGGTTCACTCATATACAACCCTCCAAGAAATGGACCAACCTTATGGGAAATTGGCATCCCAGATCGCTCTGCTGCAGAGTTCCACGTTCCAAATCCTTATCCTAACCTGATAAACCGATTATACATAGCAAAACCATTGCACAAGTTTAGACAATATGGATTATGGAAGCGTTACAACGAGTTATATCCAAATGAGGACCTCACTTACACTGTTGGCGTGAGTGATTATAGTAAAGATTGGTTTTATGCTCAAGTTCCCAGGAACATAGGAAACAACTCATTTCATCCAACAGTATGGGAGATTAAATTTGATCTCCCATTTGTTATGAGAGGCATCTACACACTCCGACTTGCCTTGGCCTCAGCTACACGTTCTAACTTGATGGTTAGGTTCAACAACCCTGTGGCTCGTCCTCCACACTTTTCTACGGGATTAATAGGTCAGGATAATGCAATAGCAAGACATGGCATCCATGGATTGTATTGGCCTTATAGTATTGAAGTAGGAAGCAATGTATTGGTGGAAGGAAGCAACACCATCTATCTTAGGCAAACAAAAGCTATGAGTCCTTTTCAAGGCATTATGTATGACTACATCCGTTTGGAAAGACCAGAAGCATAA 2079 0.4175 MRQKKQRARWGRSFWAKAEMTELHVVADLWGKESKSLCEESLSEFKGSDVAFNNPEVKLHIEKKQITVQNGIIRVTFSNPEGTILGISYNGINNVLEGRNNFNNRGNPRLCRYFDIVWNSPGAPSKLWGIEGSRFSVIEANENEVELSFSRTWNKDNSSPPLNIDKRYILRRGSSGLYIYGIFEHPEDFPATEIDHVRIVFKLQKERFQYMAIADDRQRLMPTAEDRSTGQRLDYDEAALITNPSNPKLRGEVDDKYQYSCENKDNKVHGWINLDSKTNKSVGFWMITPSNEFRSGGPIRQGLTSHVGPVTLNILHTTHYSGKEVTMTLHEGEPFKKVYGPVFAYLNSVSRVHHSEQVLWSDAVQQLSEEINRWPYDFPKSEDFVPTNKRGRVEGQLFVQDRHIKGGNFLYGENAHIGLAVPGDVGSWQRQSKGYQFWTQADKLGHFTIENIVPGDYNLYAWIPGIFGDYRYNTTITITSGCIVQLGSLIYNPPRNGPTLWEIGIPDRSAAEFHVPNPYPNLINRLYIAKPLHKFRQYGLWKRYNELYPNEDLTYTVGVSDYSKDWFYAQVPRNIGNNSFHPTVWEIKFDLPFVMRGIYTLRLALASATRSNLMVRFNNPVARPPHFSTGLIGQDNAIARHGIHGLYWPYSIEVGSNVLVEGSNTIYLRQTKAMSPFQGIMYDYIRLERPEA* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0864 692 SUPERFAMILY Galactose-binding domain-like 496 688 IPR008979 -
Vra7g0864 692 CDD RGL4_M 389 489 IPR029413 -
Vra7g0864 692 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 60 691 - -
Vra7g0864 692 Pfam Polysaccharide lyase family 4, domain II 414 483 IPR029413 -
Vra7g0864 692 Gene3D - 385 486 - -
Vra7g0864 692 CDD RGL4_N 57 350 - -
Vra7g0864 692 Gene3D - 58 345 IPR014718 GO:0030246
Vra7g0864 692 Gene3D - 497 688 - -
Vra7g0864 692 Pfam Polysaccharide lyase family 4, domain III 499 687 IPR029411 -
Vra7g0864 692 CDD RGL4_C 501 688 - -
Vra7g0864 692 Pfam Rhamnogalacturonate lyase family 55 253 IPR010325 -
Vra7g0864 692 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 60 691 - -
Vra7g0864 692 SUPERFAMILY Galactose mutarotase-like 164 363 IPR011013 GO:0003824|GO:0005975|GO:0030246
Vra7g0864 692 SUPERFAMILY Starch-binding domain-like 386 486 IPR013784 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0864 Vra-Chr7 18282346 18287676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0864 57 690 Polysaccharide Lyase AT1G09910 53.208 0.0 700
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0864 K18195 - gmx:100792575 1080.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1107 11 10575984 10579523 Vra7g0864 7 18282346 18287676 PCT