Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0851 ATGACAGAGTACCGGTCGCCGCCGACGATGAATCTCTGGACCGACGACAACACTTCCGTCATGGAGGCCTTCATGAGCTCATCCGACTTCTCATCCCTGTGGCTTCCCACGCCTCAATCCGCTGCCTCTAGCACCACTCCGGGAGCCGACGCTTCTAGAGCCCCGCCGCCACCTCCGCCGTCCCAGTCTCAGTCCCTTCTTAACCAGGAGACCTTACAACAACGGCTGCAAACGCTGATTGAAGGTGCCAGAGAGAGCTGGACCTATGCCATTTTCTGGCAATCTTCTTATGACTACTCCTCCGGCGCTTCCCTTCTCGGTTGGGGCGACGGATACTACAAGGGCGAGGAGGACAAAGGAAAAGGAAAAGCCCCCAAGGAGACGTCGTCCGCGGAGCAGGACCACCGTAAAAAGGTTCTCCGCGAGCTCAATTCCTTGATCTCCGGCCCTTCCGCTTCCGCCGATGACGTCGACGAAGAGGTATCCGACACCGAGTGGTTCTTTCTAGTGTCCATGACTCAGTCCTTTGTCAACGGCAGCGGCCTCCCTGGCCAGGCTTTTTTTAATTCCAGTCCCGTTTGGGTCGCCGGGCCCGACCGGTTATCCGAATCGGCGTGCGAGAGGGCCCGCCAGGCGCAGGTTTTTGGGCTTCAGACTCTGGTCTGCATACCGTCCGCAAACGGCGTCGTTGAGCTGGCGTCTACGGAGGTGATTTTCCAGAACCCCGATCTCATGAACAAAGTGCGGGATTTGTTCAACTTCAGCAACCCCGACGCGGGTTCCTGGCAGTTGAATTGCGTTGCCACCGATCAGGGCGAGAACGACCCTTCCTCACTCTGGCTCAACCCTTCTTCCTCTATCGAAATCAAGGACACCTCTAACGCCGTTGCACCGGCTTCAGCAAATGCAACAGTGAGCAAAACGATGCCGTTCGAAACCCCTGGTTCCAGCACTCTTACAGAAACCCCTAGTGCCGCCGCCGCAGCAGCTCACATCCCCAACCCCAAGAACCAGGGTTTCTTCCCGAGGGAGTTGAACTTCTCCAACTCCTTAAAGCCCGAATCCGGTGAAATTCTCAGCTTCGGAGAGAGCAAGAAGAGCTCTTACAATGGGAGTTACTTCCCCGCTGTAGCAGCTGAGGAGACCAACAAGAAGAGAAGGTCTCCTGTTTCTCGCAGCAGCATTGACGATGGAATGCTGTCCTTCACCTCCGGCGTCATTCTACCGGCTTCGAATGTAAAATCCGGAGGTGGTGGTGGTGGTGCCGGGGGCGGTGATTCTGAAAACTCGGATCTGGAGGCTTCCGTGGTGAAAGAGGCGGACAGCAGGGTGGTGGAACCGGAGAAAAGGCCCCGGAAGAGGGGTCGAAAGCCGGCGAACGGTAGAGAGGAGCCGCTGAATCACGTGGAAGCGGAGAGGCAGAGGAGGGAAAAGCTGAATCAAAGGTTCTACGCGCTTCGTGCAGTGGTTCCAAACGTGTCGAAGATGGACAAGGCTTCGCTCTTGGGCGATGCCATATCCTACATAAACGAGCTGAAGTCAAAGCTGAGTGAGCTTGAATCGGAGAAAGGGGAATTGGAGAAGCAATTGGATTCGGCGAAGAAGGAGCTTGAGCTGTCAACTAAAAACCCTTCTCCTCCTTCTCCTCCACGGGGACCATCTCCATCTAACAAAGAAGCGAAGGAAACGACGAGCAAGCTGATTGATTTGGAAGTAGAGGTGAAGATCATAGGGTGGGACGCCATGATAAGGATCCAATGCAGCAAGAAGAACCACCCTGCGGCAAGGTTGATGGCAGCGTTGAAGGACCTGGACCTGGACGTGCATCATGCCAGCGTCTCCGTGGTAAATGATTTGATGATCCAACAGGCCACCGTCAACATGGGAAACCGGTTTTACACGCAGGAACAGCTCCTGTCGGCGCTATCCTCCAAAATTGGCCATGCACTATAG 1953 0.5545 MTEYRSPPTMNLWTDDNTSVMEAFMSSSDFSSLWLPTPQSAASSTTPGADASRAPPPPPPSQSQSLLNQETLQQRLQTLIEGARESWTYAIFWQSSYDYSSGASLLGWGDGYYKGEEDKGKGKAPKETSSAEQDHRKKVLRELNSLISGPSASADDVDEEVSDTEWFFLVSMTQSFVNGSGLPGQAFFNSSPVWVAGPDRLSESACERARQAQVFGLQTLVCIPSANGVVELASTEVIFQNPDLMNKVRDLFNFSNPDAGSWQLNCVATDQGENDPSSLWLNPSSSIEIKDTSNAVAPASANATVSKTMPFETPGSSTLTETPSAAAAAAHIPNPKNQGFFPRELNFSNSLKPESGEILSFGESKKSSYNGSYFPAVAAEETNKKRRSPVSRSSIDDGMLSFTSGVILPASNVKSGGGGGGAGGGDSENSDLEASVVKEADSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYINELKSKLSELESEKGELEKQLDSAKKELELSTKNPSPPSPPRGPSPSNKEAKETTSKLIDLEVEVKIIGWDAMIRIQCSKKNHPAARLMAALKDLDLDVHHASVSVVNDLMIQQATVNMGNRFYTQEQLLSALSSKIGHAL* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0851 650 SMART finulus 469 518 IPR011598 GO:0046983
Vra7g0851 650 Coils Coil 502 543 - -
Vra7g0851 650 CDD bHLH_AtAIB_like 460 536 - -
Vra7g0851 650 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 466 532 IPR036638 GO:0046983
Vra7g0851 650 MobiDBLite consensus disorder prediction 35 66 - -
Vra7g0851 650 PANTHER TRANSCRIPTION FACTOR MYC2 11 646 - -
Vra7g0851 650 Gene3D - 455 542 IPR036638 GO:0046983
Vra7g0851 650 MobiDBLite consensus disorder prediction 518 564 - -
Vra7g0851 650 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 72 252 IPR025610 -
Vra7g0851 650 PANTHER MYC 11 646 IPR045084 GO:0003700|GO:0006355
Vra7g0851 650 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 463 512 IPR011598 GO:0046983
Vra7g0851 650 MobiDBLite consensus disorder prediction 412 473 - -
Vra7g0851 650 MobiDBLite consensus disorder prediction 35 50 - -
Vra7g0851 650 MobiDBLite consensus disorder prediction 518 538 - -
Vra7g0851 650 Pfam Helix-loop-helix DNA-binding domain 467 512 IPR011598 GO:0046983
Vra7g0851 650 MobiDBLite consensus disorder prediction 432 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0851 Vra-Chr7 17644439 17646904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0851 1 647 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 56.399 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra7g0851 bHLH-MYC_N 1e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0851 K13422 - gmx:100790854 974.156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g0851 7 17644439 17646904 Vra7g0851 7 17644439 17646904 ECH