Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0850 ATGGCGTCCGATGCCTTCACCGACAAGAACATTGTCTTCAGGAAACTCAAGGCCAAGTCTGAAAATAAGATGTGTTTCGATTGCAATGCGAAGAACCCTACCTGGGCGTCCGTCACGTATGGGATCTTCCTCTGCATCGATTGCTCCGCCGTTCACCGCAGTCTCGGCGTGCACATCAGCTTCGTGAGGTCTACAAATTTAGACTCATGGAGTCCTGAGCAACTAAAGATGATGAGCTTTGGAGGAAACAATCGTGCACAGGTTTTCTTTAAGCAACATGGTTGGACTGATGGTGGCAAAATAGAGGCTAAGTACACATCCAGAGCTGCGGACTTGTATAGGCAACTTCTTTCTAAGGAAGTGGCTAAAAGTATGGCTGAGGAAGGAGGCTTGCCTTCATCACCTGTTGCTTCTCAGTCTTCCCAGGGTATTAATGGGCTTCATGAAATCACTGAAATCAGGACCAATGAAGTTCCAAAAGAAAACATTCTGGAGAAGCCTGAAAAGCCCGAGGCCACCTCTTCACCTAGGGCTTCTCACTCAGTAATTTCAAGTACTGTCAAGAAACCTATTGGTGGTAAAAAAGCTGGGAAGAGTGGGGGGCTTGGTGCTCGGAAACTCACTAAAAAGACAAGTGATTCTATCTATGAGCAGAAGCCTGAGGAAACCCCTGCTCCTGTTCCATCCTCAACAAATATGCCTGCTGGACCATCTCTGACATCTCGGTTTGAGTATGTAGAAAATGTCCAATCCTCTGAGTTGAATACTGGAGGTTCATCCGTGATGAGTCATGTGTCTCCACCAAAGTCATCAAGCTTTTTTGCAGACTTTGGAATGGATGGTGGCTTTCCAAAGAAATCTGGCCCAATCTCCTCCAAAGTGCAAATTCAGGAATCTGATGAGGCAAGAAGGAAGTTTTCAAATGCTAAATCTATTTCATCATCCCAATTTTTTGGAGATCAGACCAAAGCTGCAGATTTGGATTCTCAAGCTACTTTGTCTAAGTTTTCGGGTTCGACTGCCATCTCCAGTGCCGATCTTTTTGGTGACTCAAGAGACAACGCCATTGATCTTTCTGCCAGTGATCTCATCAATCGATTATCTTTTCAGGCACAACAGGACCTCTCATCCCTTAAGAACATTGCAGGAGAGACTGGAAAGAAGATCAGCACATTAGCCTCCACATTGATGACTGATCTTCAGGACCGAATCCTCTAA 1218 0.454 MASDAFTDKNIVFRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSPEQLKMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAADLYRQLLSKEVAKSMAEEGGLPSSPVASQSSQGINGLHEITEIRTNEVPKENILEKPEKPEATSSPRASHSVISSTVKKPIGGKKAGKSGGLGARKLTKKTSDSIYEQKPEETPAPVPSSTNMPAGPSLTSRFEYVENVQSSELNTGGSSVMSHVSPPKSSSFFADFGMDGGFPKKSGPISSKVQIQESDEARRKFSNAKSISSSQFFGDQTKAADLDSQATLSKFSGSTAISSADLFGDSRDNAIDLSASDLINRLSFQAQQDLSSLKNIAGETGKKISTLASTLMTDLQDRIL* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0850 405 MobiDBLite consensus disorder prediction 153 173 - -
Vra7g0850 405 CDD ArfGap_ArfGap2_3_like 8 123 - -
Vra7g0850 405 PRINTS HIV Rev interacting protein signature 22 41 IPR001164 GO:0005096
Vra7g0850 405 PRINTS HIV Rev interacting protein signature 41 58 IPR001164 GO:0005096
Vra7g0850 405 PRINTS HIV Rev interacting protein signature 62 83 IPR001164 GO:0005096
Vra7g0850 405 ProSiteProfiles ARF GTPase-activating proteins domain profile. 10 128 IPR001164 GO:0005096
Vra7g0850 405 MobiDBLite consensus disorder prediction 150 239 - -
Vra7g0850 405 MobiDBLite consensus disorder prediction 224 239 - -
Vra7g0850 405 SMART arf_gap_3 10 126 IPR001164 GO:0005096
Vra7g0850 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD9-RELATED 1 405 - -
Vra7g0850 405 Gene3D Arf GTPase activating protein 1 138 IPR038508 -
Vra7g0850 405 Pfam Putative GTPase activating protein for Arf 12 108 IPR001164 GO:0005096
Vra7g0850 405 PANTHER ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED 1 405 - -
Vra7g0850 405 SUPERFAMILY ArfGap/RecO-like zinc finger 12 124 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0850 Vra-Chr7 17469036 17474429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0850 13 91 C2H2 Transcription Factor Family AT4G21160 46.250 1.09e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0850 K12493 K11855 gmx:100789796 703.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g0850 7 17469036 17474429 Vra7g0850 7 17469036 17474429 ECH
Vra7g0850 7 17469036 17474429 Vra7g0850 7 17469036 17474429 PCT