Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0843 ATGCAATCATCTCCTTCTTCCTTCCCTTACAGATTCAGATATGATGTGTTCCTCAGTTTTCGAGGGAAAGATACTCGCCAAGGTTTCACAGGAAATCTCTACAAATCTCTTTGTGATAGAGGAATTCACACCTTCATCGATGACCACCACCTTCCCAGAGGGGACCAGATTTCCTCTGAACTTGAGAACGCAATCCAAGACTCCAGAATTTTCATCATTGTCCTCTCTCAAAACTATGCATCTTCCACCTTCTGCTTAAATGAACTTCATTACATCCTGAGGTTTATTAAGCATAAGGGTCGGTTGATTTTCCCAGTTTTTTATGGAGTTGACCCTTCTCATGTGAGACACCACACAGGTACTTTTCGAGAGGCGTTGGCTCATCATCAAAACAAGTTGAATTCTTATTCCAACTGGGAGAAGCTTGAAACATGGAAGATGGCTCTGCATCAAGTGGCTAACTTGTCTGGCTATCATTTCAAACATGGGGAAGGATATGAATATGAGTTCATTGAGAGGATTGTTGAGTTGGTCTGCAGCAAGATTAACCGTGCTGCTTTACATGTTGCGGATTACCCAGTTGGATTAGAGTCACAGGTGCTAGAAGTAAAGTTGCTTCTAGATGTTGGATGTGATGATGTTGTCCACATGGTGGGGTTCCATGGACTTGGTGGAGTAGGGAAAACGACACTTGCTGCTGCAGTTTATAATTCCATTGCTGACCATTTTGAAGCTTTATGTTTTCTTGAAAACGTGAGAGAAACTTCGAGCAAACATGGGTTACTGCATCTCCAAAGCAACCTTCTTTCCGAAACTGTTGGAGAGATTAAGTTAACAAGTGTCAAAAAGGGAATTTCTGTAATACAGCACAGGCTCCAGAAAAAGAAGGTTCTTTTGATTCTAGATGATGTTGACAAAGAGGAACAACTACAGGCACTTGCAGGAAGACCACATTGGTTTGGTCTAGGCAGTAGAATCATCATAACAACTCGAGACAAACAGTTGCTAAAATGTCATCGGGTTAAAAGAACATACGAGGTTAAAGAATTGAATGAGGAAAATGCTCTTGAATTACTTACTTGGAAATCTTTCAAGTTTGAAAAATTTGATCCAAGTTACAAGGATGTTTTAAATCTGGCAGTAACTTATGCCTCGGGCCTTCCATTGGCTTTGGAAGTAATAGGTTCCAACTTATTTGGAAAAAATATAGAACAATGGAAGTATGCTTTGGATCAGTACAAGAAAATTCCT 1251 0.4029 MQSSPSSFPYRFRYDVFLSFRGKDTRQGFTGNLYKSLCDRGIHTFIDDHHLPRGDQISSELENAIQDSRIFIIVLSQNYASSTFCLNELHYILRFIKHKGRLIFPVFYGVDPSHVRHHTGTFREALAHHQNKLNSYSNWEKLETWKMALHQVANLSGYHFKHGEGYEYEFIERIVELVCSKINRAALHVADYPVGLESQVLEVKLLLDVGCDDVVHMVGFHGLGGVGKTTLAAAVYNSIADHFEALCFLENVRETSSKHGLLHLQSNLLSETVGEIKLTSVKKGISVIQHRLQKKKVLLILDDVDKEEQLQALAGRPHWFGLGSRIIITTRDKQLLKCHRVKRTYEVKELNEENALELLTWKSFKFEKFDPSYKDVLNLAVTYASGLPLALEVIGSNLFGKNIEQWKYALDQYKKIP 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0843 417 Gene3D - 183 345 IPR027417 -
Vra7g0843 417 SMART till_3 13 155 IPR000157 GO:0007165
Vra7g0843 417 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 158 IPR035897 -
Vra7g0843 417 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 417 IPR044974 GO:0006952
Vra7g0843 417 Pfam NB-ARC domain 201 413 IPR002182 GO:0043531
Vra7g0843 417 Gene3D - 9 182 IPR035897 -
Vra7g0843 417 ProSiteProfiles TIR domain profile. 12 182 IPR000157 GO:0007165
Vra7g0843 417 Pfam TIR domain 14 180 IPR000157 GO:0007165
Vra7g0843 417 CDD AAA 220 332 - -
Vra7g0843 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 416 IPR027417 -
Vra7g0843 417 Gene3D - 349 417 IPR042197 -
Vra7g0843 417 PRINTS Disease resistance protein signature 217 232 - -
Vra7g0843 417 PRINTS Disease resistance protein signature 291 305 - -
Vra7g0843 417 PRINTS Disease resistance protein signature 384 398 - -
Vra7g0843 417 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 16 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0843 Vra-Chr7 17269560 17271128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0843 14 396 WRKY Transcription Factor Family AT4G12020 26.904 2.16e-32 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0843 - - vra:106766137 838.95