Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0841 ATGAAGGAGGATTCTGACTGCNCTGAAGAAGCGGAGAAGAAGCGGAGAAGAACGATAGTGTCAATGGAAGAGGAGGGNTGGAAGGGGAAGAGATCCTCCGATCCACGTCCATGCACGGAGTGCGGCAAGAAGTTCTGGTCGTGGAAGGCACTCTTCGGGCACATGCGATGCCACCCTGAGCGTCAGTGGAGAGGGATCAACCCTCCGCCCAACGCAAGAAGACATCATCATCAACAACAGGAGCAGCAACGACAACAGCAACAACAGATGACGATGATAATGAGCCAGGAAGACCAGGAGGTGGCTGCCTGTTTGCTTCTGCTGGCGAATTCCAACAACAACAACAACAGAGAGAAAGGCAAAGAGAAAGAGGAAGAGGTTCAGCAGTGGCAGTTCGAGTGTTCGAGTTGCAACAGGGTGTTCGGATCGCACCAGGCTCTTGGAGGGCACCGTGCGAGTCACAAGAACGTGAAAGGGTGTTTTGCGAACACTGGTAGTAATGTAAGCATAGGGTTAGGCATTGGAAGTAGCGGGAAGTGTGAGGAGGAGAACGTGAACGTGAACGTGAACATGAACATGAACATGAGTGGTGATGGTCACAAGTGCAGCATATGCCTGAGGGTGTTCTCCACAGGGCAAGCACTTGGTGGGCACAAGAGGTGTCATTGGGAGAATCGGTTTAAGTACAAGAAGGATTCAGTGATGGAGGTGGATGAGGGGGATTACACACACTGCAATGCCACACACCCCAAACTCTTCTCTAACAGTGGCAACACCAAGTTGAAGCTTGGCCACCCAGGGACCTTCTACTTCATGAGCGGTGCTTCAGGGCACTGTGAGGTGGGACAGAAGATGATTGTGAGGGTCATGGTGGATGAGTCTCTTCCTCAACATGCCAAGTCTTCTGGTTACCATATTGCAATTTCTCCAACTGGGCTGTCTCAAGTGCTCTTCTTTCAGTTTCTTTTGGCATCTTTCTTAGAGAAAATGAGAATTCAAACAAGGAATATTGTGTCCTTTACCAATGAAGTATTGGATTTGATGAACCTTCAATTTGAGTAG 1062 0.4944 MKEDSDCXEEAEKKRRRTIVSMEEEGWKGKRSSDPRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNARRHHHQQQEQQRQQQQQMTMIMSQEDQEVAACLLLLANSNNNNNREKGKEKEEEVQQWQFECSSCNRVFGSHQALGGHRASHKNVKGCFANTGSNVSIGLGIGSSGKCEEENVNVNVNMNMNMSGDGHKCSICLRVFSTGQALGGHKRCHWENRFKYKKDSVMEVDEGDYTHCNATHPKLFSNSGNTKLKLGHPGTFYFMSGASGHCEVGQKMIVRVMVDESLPQHAKSSGYHIAISPTGLSQVLFFQFLLASFLEKMRIQTRNIVSFTNEVLDLMNLQFE* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0841 353 SUPERFAMILY beta-beta-alpha zinc fingers 35 154 IPR036236 -
Vra7g0841 353 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Vra7g0841 353 SMART c2h2final6 132 154 IPR013087 -
Vra7g0841 353 SMART c2h2final6 36 58 IPR013087 -
Vra7g0841 353 SMART c2h2final6 200 222 IPR013087 -
Vra7g0841 353 SUPERFAMILY Cupredoxins 227 290 IPR008972 -
Vra7g0841 353 Pfam Plastocyanin-like domain 227 283 IPR003245 GO:0009055
Vra7g0841 353 SUPERFAMILY beta-beta-alpha zinc fingers 198 226 IPR036236 -
Vra7g0841 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Vra7g0841 353 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 30 231 - -
Vra7g0841 353 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 30 231 - -
Vra7g0841 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 200 227 IPR013087 -
Vra7g0841 353 ProSitePatterns Zinc finger C2H2 type domain signature. 134 154 IPR013087 -
Vra7g0841 353 ProSiteProfiles Phytocyanin domain profile. 227 291 IPR003245 GO:0009055
Vra7g0841 353 Pfam C2H2-type zinc finger 37 60 - -
Vra7g0841 353 Pfam C2H2-type zinc finger 132 155 - -
Vra7g0841 353 Pfam C2H2-type zinc finger 200 224 - -
Vra7g0841 353 ProSitePatterns Zinc finger C2H2 type domain signature. 202 222 IPR013087 -
Vra7g0841 353 Gene3D - 183 294 IPR008972 -
Vra7g0841 353 ProSiteProfiles Zinc finger C2H2 type domain profile. 132 159 IPR013087 -
Vra7g0841 353 MobiDBLite consensus disorder prediction 60 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0841 Vra-Chr7 17256443 17266304 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0841 36 224 C2H2 Transcription Factor Family AT4G35280 55.556 6.71e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra7g0841 Cu_bind_like 2e-10 CL0026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0841 - - vra:106766136 640.958