Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0839 ATGGAGGGTACCGAACCTGATATAGAAAGGCATCCCCTGGAAAATTCAGAAAAAGAATGTCCAATATCTGCCGTGGTGGTTTTGGGGCAAGAGAGTCAAACTAGGAACCCCTGTGGTTCTTCTGTAGAAGACACTATTAAGGTCATTGGCACTGAGAATGAGTGTACAGGTCCAAATGTTTGTCCTGTTGACCATAGTCATATTAAAATCAATGATGAATGCCAGACATCAACTATTTTCCATGATGACAAATTTCATATTGATAATGTCAGTAGTGGAGAGTTGTGCGAGAACTCCTGTGCGAGTACTGATGTGAAAAACGAGGACGAAATATATGTGGCTCCAAAGATTGGTATGGAGTTTGAATCAGAAGACAGTGCTTACAAATGTTATAGCATGTATGCTGTCCTGAAAGGTTTTAGCATAAGAAAGGATTTTGTCAACAAAAGTAGGATAAATGGTGCAGTGGTATCCAGAAGATACACCTGCCATAGACAGGGTTATCGGCCAAACAAAAATGGTACATACTTGAGGAAATTTCAGCAGGAAACAAGAACTGGTTGCTTGGCACACATGACTATTGCTCGTCAGCCGAATGGAAAATTTCAGGTCACTCATTTTGAAACTGAGCACAATCATGAGTTTGTAAAACCCTGTACTGCTCATATGTTACCATCACAGAAAAAATTGAGTTTTGCTCAAGCTATTGAAGCAAACTTAACTGTATCCGGGTTGGATGAGACACCAAAACTGGGAATGGGATTTGACTCAGACGAGCATGCATATGAATTTTATAATACATATGCTGGACGAGTAGGTTTCAGTGTAAGAAAAGATTATGTAAATAGGAGTAAAATTGATGGTGCTGTGGCATCTCGACGATTTACTTGCTTCAGAGAAGGTTTTCGGCAGAAGGACAAACAAGATATGAACACAAAGAAACCTCGGAAGGATACTAGAATTGGATGTTTGGCCCAAATGGTTATTTCTCGCCAACCTGATGGTATGTATTATGTTACCCACTTTGAGGAAAAGCATAATCATGAACTTGTTGCTGCATGTAGAGTGCACATGTTAAGATCACAACAAAAGGGGTTAACTGCTACTCAAATTGAAAAGAACATAGTGGATGGATCCAATATGCTGCCTACATCAACCTCTGAAACCAATTGCAAGGCTCGTCTGGATTATGATCCCGTCAACCATGAATACAAACTACCTTTCAAATGTTCTAGCAAAATGAAGGGAGAAATTGAAAAGATTAAGCTTCACTTCCAAATCAAGCAAAGAAAGAATCCTTCTTTCTTTTACGCATTCCAGCTTGATGCTGATGATCAAATAACTAATATATTCTGGGCTGATACAAAGATGATTATAGATTACACTGATTTTGGTGATGTTGTTTGTTTTGATAGCAGTTATAAATACTATAAGGACTCCTGGCCATTTGTTCCATTCCTTGGTATAAATAATCACCAGCAAATGACTATCTTTGGGGTTGCACTTCTTCAGAATGAATCTGTAGAATCTTTGAAGTGGCTGTTTATAGTTTTCCTTGAGGCAATGTCTGGAAGAAAGCCAAAGACGATACTTACAGATCTAGATGTTGTAACAGCTGAAGCAATCAATGTCATACTACCCCAAACAAATCATCGAGTTTGTGTATGGCATGTCTATCAAGATGCCCTCAAGCATCTGAGTCATGTTTCTGCTGGATCTGATTCTTTCGTAAATGATTTAAGAAGCTGCCTTTTTCATCACGAGGAGGAGGATTATTTTGTTAATGAATGGAATGCTCTCCTGGACAAATATAATCTGTGGGAAAATGAATGGTTGCAACAAATATTTGGAAGCAGACATCGATGGGCCATAGCATATGGAAGACAATATTTTTGTGCTGACATAGAAAGCGTGCTACTGAGACAAAATCTTACTGGCAACCTGAAAAGGTACCTAAAGCATGACTCCGACATTCTTCCACTTTTCAAGTATCTTGTTAAGGTTGTTACTGATTGGCACTACAAGGAATTAGAAGCCAATTATGACATGAACCAGCGTATGCCACCGTTGCTGGGGGATATCATTACGTTAAAGCATGCAAGAGCTCCATACACACCAAAGATATTTGAGTTATTTCAGAAAGAATATGAAGCATGTTTGAATCTAGTGATAAAGCATTGCACTGAAAATAGATCATTTTATAATTATAAAGTTAGCGTATATGAACAGGCACGGGAGTATTCTGTTACATTTGATTCTTCTGATGAGACAATCAGTTGTAGCTGTATGAAATTTGAGTACGTGGGGATATTATGCTGCCATGCATTAAAAGTTCTTGACTATGTGAACATAAGGATTGTTCCATCTCGGTACATATTAAAGAGATGGACAAAAGATGCTAGAGTTTGA 2409 0.3836 MEGTEPDIERHPLENSEKECPISAVVVLGQESQTRNPCGSSVEDTIKVIGTENECTGPNVCPVDHSHIKINDECQTSTIFHDDKFHIDNVSSGELCENSCASTDVKNEDEIYVAPKIGMEFESEDSAYKCYSMYAVLKGFSIRKDFVNKSRINGAVVSRRYTCHRQGYRPNKNGTYLRKFQQETRTGCLAHMTIARQPNGKFQVTHFETEHNHEFVKPCTAHMLPSQKKLSFAQAIEANLTVSGLDETPKLGMGFDSDEHAYEFYNTYAGRVGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQKDKQDMNTKKPRKDTRIGCLAQMVISRQPDGMYYVTHFEEKHNHELVAACRVHMLRSQQKGLTATQIEKNIVDGSNMLPTSTSETNCKARLDYDPVNHEYKLPFKCSSKMKGEIEKIKLHFQIKQRKNPSFFYAFQLDADDQITNIFWADTKMIIDYTDFGDVVCFDSSYKYYKDSWPFVPFLGINNHQQMTIFGVALLQNESVESLKWLFIVFLEAMSGRKPKTILTDLDVVTAEAINVILPQTNHRVCVWHVYQDALKHLSHVSAGSDSFVNDLRSCLFHHEEEDYFVNEWNALLDKYNLWENEWLQQIFGSRHRWAIAYGRQYFCADIESVLLRQNLTGNLKRYLKHDSDILPLFKYLVKVVTDWHYKELEANYDMNQRMPPLLGDIITLKHARAPYTPKIFELFQKEYEACLNLVIKHCTENRSFYNYKVSVYEQAREYSVTFDSSDETISCSCMKFEYVGILCCHALKVLDYVNIRIVPSRYILKRWTKDARV* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0839 802 Pfam MULE transposase domain 467 560 IPR018289 -
Vra7g0839 802 ProSiteProfiles Zinc finger SWIM-type profile. 747 783 IPR007527 GO:0008270
Vra7g0839 802 Pfam FAR1 DNA-binding domain 131 216 IPR004330 -
Vra7g0839 802 Pfam FAR1 DNA-binding domain 263 351 IPR004330 -
Vra7g0839 802 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 97 232 IPR031052 GO:0006355
Vra7g0839 802 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 243 802 IPR031052 GO:0006355
Vra7g0839 802 Pfam SWIM zinc finger 736 782 IPR007527 GO:0008270
Vra7g0839 802 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 97 232 - -
Vra7g0839 802 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-LIKE 243 802 - -
Vra7g0839 802 SMART 26again6 758 785 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0839 Vra-Chr7 17212494 17217725 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vra7g0839 MULE 4.7e-21 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0839 K17604 - gmx:102659753 1385.93