Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0833 ATGGGAAGACAACCTTGTTGTGATAAGGCTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTTATGAATTTCATTCTCAACAATGGTATTCACTGCTGGAGAGCAGTTCCCAAGCTAGCAGGATTGTCGAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGACCAGACCTCAAGAGAGGTGGATTTACTGAAATGGAAGAGGATCAAATTATACAACTACATTCATCTCTTGGTAACAGGTGGTCTAAGATTGCTTCACATTTTCCAGGGAGGACAGATAATGAAATCAAGAACCATTGGAACACAAAGATAAAAAAGAGGTTGAAGCTCCTTGGTTTGGACCCTTTGACCCTGATGCCAATTGGTGATGACAAACTCAAGACAGAGAAACAGCAGCAAAAAAGCACTTCAAAAGGGTCTGACCAAGACATGCATGCCACAGGAAAAGAGCCAAAAACAGAAGAAAAAAAGGTTACATGGGATGACAGCACTGGTTTTCTGAACAATTATGAAGTGTTGGGATCATGGCTGAGCCAAGAAACCAAAGGCTGCAGCAGCTCTTATTGTAGTTCTTCTTTCTCACTGGATGATTCTAGCAACCTTTCCTTGCAACAATGGGTTGAGGATTTGGATTCCAGTCTCTCATGGGATAGCTTCAATCCACTTTACACTGATTTTCCCTTCTTGGAAAATAGGCAATAA 726 0.416 MGRQPCCDKAGLKRGPWTIEEDHKLMNFILNNGIHCWRAVPKLAGLSRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSSLGNRWSKIASHFPGRTDNEIKNHWNTKIKKRLKLLGLDPLTLMPIGDDKLKTEKQQQKSTSKGSDQDMHATGKEPKTEEKKVTWDDSTGFLNNYEVLGSWLSQETKGCSSSYCSSSFSLDDSSNLSLQQWVEDLDSSLSWDSFNPLYTDFPFLENRQ* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0833 241 MobiDBLite consensus disorder prediction 131 166 - -
Vra7g0833 241 Gene3D - 11 67 - -
Vra7g0833 241 CDD SANT 16 61 IPR001005 -
Vra7g0833 241 SMART sant 66 114 IPR001005 -
Vra7g0833 241 SMART sant 13 63 IPR001005 -
Vra7g0833 241 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 179 - -
Vra7g0833 241 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vra7g0833 241 Gene3D - 69 165 - -
Vra7g0833 241 CDD SANT 70 110 IPR001005 -
Vra7g0833 241 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra7g0833 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra7g0833 241 PANTHER MYB DOMAIN PROTEIN 40 2 179 - -
Vra7g0833 241 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra7g0833 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra7g0833 241 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Vra7g0833 241 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra7g0833 241 MobiDBLite consensus disorder prediction 151 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0833 Vra-Chr7 17121209 17122353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0833 1 165 MYB Transcription Factor Family AT5G16600 63.030 4.00e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra7g0833 Myb_DNA-binding 5.5e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0833 K09422 - gmx:100819471 377.867