Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra7g0785 | ATGAATGTCACTCGTTCTGCTGTGATGCTTCATCTTCAAAACCCACCAATTCGCTACCAGTTCTTCTCCCACTTCCTCAAACCAACCTTCCCTTCTGTATTCAAACCTCGTCCATTCTCTCTAATCACTCCACGCCAAACACATGCTATACCCTTTGTTAATGCTGTTGCATCACCTTCATCATCACAAGCTTCCAATGGCAGAGACACTTTCTTTGCAGAAGAAAACGTTTCCTGGACTTCACTTGGTCTCTCTGATACCATTTCTAGAGCGCTCTCTGATATTGGCCTCAACAGACCCTCTCTCGTTCAGGCTTCTTCAGTACCGTCTGTGATGTCAGGGAAGGATGCTGTTATTGCCGCGGAGACTGGGAGTGGTAAGACATACAGTTACCTAGTTCCTCTTATTGATAAGCTAAGGGATGCCCAGGAACGTTCTCTACATGCTATGTCTGATCAGGAGGTGACCCCGGCACAGAAAGTTCTGCTCATCCTTTGTCCGAATGTGCAACTTTGTGAGCAGGTAGTTAAGATGGCCAGCAGTCTACGTAGGGATGATGGTGAGGCGATAGTCAGTGTGGCTGCCATTTGTGGTAGGCAGGGATGGCCAATTCGGGAACCTGATGTCATTGTGACAACACCTGCTGCCCTTCTGAATTATGTTGACCTTGATAGAACCCGCCGCATGCAATTTATGCGTGGTGTTAAATATGTGGTGTTTGATGAAGCCGATATGCTTCTATGTGGGAGCTTCCAGAATAAAGTAATCCGTTTGATAAATTTGCTCCGCTTTGATGAAAAGGTCTTGTCTCGATCAAAAAAATCAGTAGCAGAGTTTTCAACGAAAGATGAATCTTCCTTGTCATCAGAAGCTGCTTTTGAAGGCGAAGAGGAACTTCAAACTGAAGCCACCTTAGAAGAGGATGACACTGATAAAGAGGATGATATTGTTGATATTAATAATGAAGACACATCTGTTAAACAAAGAGACTGGAGGAGAGTGAGAAAAACTTATGAGCGTAGTAAACAGTATGTTTTTGTTGCTGCAACACTTCCAGTGAATGGAAAGAAGACAGCTGGAGGGATATTGAAACATATGTTTCCTGATGCTGAGTGGATTTGTGGAAACTATCTTCATTGCCACAATCCGAGATTGGAGCAAAAATGGATAGAAGTTACCGTTGATACTCAAGTGGATGAACTCATAAAGGCTGTGAATCACAGTTTCAGATCTGAAGATTTGGTTAATGCTGGTGGCATTCACAGAACAATGGTGTTTGCAAATACTGTGGAGGCTGTTGAAGCTGTGGCAAAGATATTACTCCGATCTGGAATTGAATGTTCACGCTATCATAAGAATTGCACATTGGAGGAACGAGCACAGACCTTAGTTGATTTTCATGATAAAGGTGGTGTTCTTGTATGCACTGATGCTGCTGCTCGAGGTGTTGATATTCCAAATGTTTTACATGTTATTCAGGCAGATTTTGCTACTTCTGCTGTAGACTTTTTGCATAGGGTTGGTCGTACAGCTAGAGCTGGTCAAATTGGACTTGTTACTAGCATGTACACCGAATCCAACAGGGAACTTGTCGATGCAGTTCGTTGGGCAGAGAAACGTGGTCAACCTGTGGAAACCGCATTTAGCAGGAAAAGAAGCTTCCGCAACAAGCTCAAGAAGAGGGGTACTAACAAAGTCAGAGATTCAACAACTATTAAAGAGAGGGCACTGGCATGA | 1737 | 0.4358 | MNVTRSAVMLHLQNPPIRYQFFSHFLKPTFPSVFKPRPFSLITPRQTHAIPFVNAVASPSSSQASNGRDTFFAEENVSWTSLGLSDTISRALSDIGLNRPSLVQASSVPSVMSGKDAVIAAETGSGKTYSYLVPLIDKLRDAQERSLHAMSDQEVTPAQKVLLILCPNVQLCEQVVKMASSLRRDDGEAIVSVAAICGRQGWPIREPDVIVTTPAALLNYVDLDRTRRMQFMRGVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKVLSRSKKSVAEFSTKDESSLSSEAAFEGEEELQTEATLEEDDTDKEDDIVDINNEDTSVKQRDWRRVRKTYERSKQYVFVAATLPVNGKKTAGGILKHMFPDAEWICGNYLHCHNPRLEQKWIEVTVDTQVDELIKAVNHSFRSEDLVNAGGIHRTMVFANTVEAVEAVAKILLRSGIECSRYHKNCTLEERAQTLVDFHDKGGVLVCTDAAARGVDIPNVLHVIQADFATSAVDFLHRVGRTARAGQIGLVTSMYTESNRELVDAVRWAEKRGQPVETAFSRKRSFRNKLKKRGTNKVRDSTTIKERALA* | 579 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra7g0785 | 578 | CDD | SF2_C_DEAD | 385 | 523 | - | - | |
Vra7g0785 | 578 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 397 | 562 | IPR001650 | - | |
Vra7g0785 | 578 | Gene3D | - | 386 | 577 | IPR027417 | - | |
Vra7g0785 | 578 | CDD | DEADc | 88 | 269 | - | - | |
Vra7g0785 | 578 | MobiDBLite | consensus disorder prediction | 295 | 310 | - | - | |
Vra7g0785 | 578 | Pfam | DEAD/DEAH box helicase | 103 | 268 | IPR011545 | GO:0003676|GO:0005524 | |
Vra7g0785 | 578 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 53 | 550 | - | - | |
Vra7g0785 | 578 | MobiDBLite | consensus disorder prediction | 563 | 578 | - | - | |
Vra7g0785 | 578 | SMART | ultradead3 | 96 | 388 | IPR014001 | - | |
Vra7g0785 | 578 | Gene3D | - | 53 | 367 | IPR027417 | - | |
Vra7g0785 | 578 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 77 | 105 | IPR014014 | GO:0003724 | |
Vra7g0785 | 578 | Pfam | Helicase conserved C-terminal domain | 421 | 514 | IPR001650 | - | |
Vra7g0785 | 578 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 108 | 369 | IPR014001 | - | |
Vra7g0785 | 578 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 | 53 | 550 | - | - | |
Vra7g0785 | 578 | SMART | helicmild6 | 434 | 514 | IPR001650 | - | |
Vra7g0785 | 578 | MobiDBLite | consensus disorder prediction | 559 | 578 | - | - | |
Vra7g0785 | 578 | MobiDBLite | consensus disorder prediction | 287 | 310 | - | - | |
Vra7g0785 | 578 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 109 | 526 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra7g0785 | Vra-Chr7 | 16029359 | 16035678 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra7g0785 | 328 | 535 | Eukaryotic Initiation Factors Gene Family | AT5G11200 | 27.197 | 1.52e-11 | 65.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra7g0785 | - | - | gmx:100789323 | 936.791 |