Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0740 ATGGAGGAGAGGAAGTATGTGTGCAAGTATTGCAGCAAGAGGTTTCCTTGTGGGAAGTCTCTGGGGGGTCACATCAGAACCCATATGACTGAAGAAAGAAGTAATGCTGATGCTGACATCTTCATCAAGTCGGATGGTTTCAAGAAGAAGAGAGATTTATGGTGCGAAGATGTTGTCGGGAACCCCATTTATGGCCTCAGAGAGAACCCCAAGAAAACAATGAGGTTTGTGCATTCTGGCGCTCGTCGTGGTTGTGCTAGTGGTGTTGCCGGTGCCAACTATGAAAAGGAGGAGAGGTTCTGCAAAGAATGCGGGAAAGGTTTCCCATCGCTGAAGGCTCTTTGTGGTCACATGGCTAGTCACTCTGATAAAGAGAAGAGAACCATCAAGTTTGAAGACAGTGACAAGAAACTGAAATTGGTTATGGACAGTCAATCTGACACCGAGACCTGTTCTCCCTCTCATCCAAGGAGATCCAAGAGAATGAGGGTCAAGACCATTAACCTTTCCAATCACCCTTTTTCTTCCTCTTCTCCTTCTTCTTCTTCTGTTCCGTTGCCCAATGGCTCTTCACCCGTTTCAGAAGTGGAGCAGGAGCAAGAAGAGGTTGCTAGGTGCTTGATGCTGCTGTCTAGAGATTCTACCTTCAAGGGTCGTTTTGCTTCTGTCACCGAATGTTCTGATAACAACTCAGTTGTTCTAGAAGCAAAATCCTCCTCTCCTGATACTCGGTTTGGTGTCAGCAATGGTAACTATAACTTTGTCTCTAATAATGCTTATGATCTTGCTCACAACAAGTTGCTTAGGGTTAATGATATCAAGTTAAAGTCTGTTGAGTTTGGTGCTTCTGATAATTCAGGTTCTAGATATTTCAAACACGGTCCCAAAACCAAAGTGGTTGACTCAGATGTCTCCAATGATGAATTTAAGTGGCCCAAAGTGGGAGATAAGTCAAGCAAATACACTGCAACTTTGGTAAAGAAGGAGGATTTGGATTATGATGGAACAGATGGAACTGCAAGGAAGTTTGATTCAAGAAAGAGAAGCAACTATGATTCTCTTGATAACAAGAAGATAGCAAATGGTTTTGGTAATGAAGTATATGGGAATAGCACAAAAGGTTGGAAGTACGAGTCTTTGGAGGGTGAAAGGGACTATGATTCTTATGATTATTCCATTGAGGAGAGCCATGAAAACAGTTCAGAGACAGAATCTTATCCTGCTCCCAGGTCTCATAACAGTAAGGCCCTCAATGGGAAGAAGTCCACCAGCAAGGCCAAGAAGAAGTTGAAATCTAAGAAAAGCAGGGATCATGAGTGTCCAATCTGCTACAAAATTTTCAGGTCAGGCCAAGCCTTGGGAGGACACAAAAGATCCCATTTCATTGGTGGTTCTGAAGAAAACACTCTGGTGATCAAACAAGCTGCTCCTGTTGTTCCATGCCTGATTGATCTAAATCTACCTGCTCCTGTTGACGAATAA 1482 0.4332 MEERKYVCKYCSKRFPCGKSLGGHIRTHMTEERSNADADIFIKSDGFKKKRDLWCEDVVGNPIYGLRENPKKTMRFVHSGARRGCASGVAGANYEKEERFCKECGKGFPSLKALCGHMASHSDKEKRTIKFEDSDKKLKLVMDSQSDTETCSPSHPRRSKRMRVKTINLSNHPFSSSSPSSSSVPLPNGSSPVSEVEQEQEEVARCLMLLSRDSTFKGRFASVTECSDNNSVVLEAKSSSPDTRFGVSNGNYNFVSNNAYDLAHNKLLRVNDIKLKSVEFGASDNSGSRYFKHGPKTKVVDSDVSNDEFKWPKVGDKSSKYTATLVKKEDLDYDGTDGTARKFDSRKRSNYDSLDNKKIANGFGNEVYGNSTKGWKYESLEGERDYDSYDYSIEESHENSSETESYPAPRSHNSKALNGKKSTSKAKKKLKSKKSRDHECPICYKIFRSGQALGGHKRSHFIGGSEENTLVIKQAAPVVPCLIDLNLPAPVDE* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0740 493 ProSitePatterns Zinc finger C2H2 type domain signature. 440 460 IPR013087 -
Vra7g0740 493 SUPERFAMILY beta-beta-alpha zinc fingers 4 121 IPR036236 -
Vra7g0740 493 SMART c2h2final6 438 460 IPR013087 -
Vra7g0740 493 SMART c2h2final6 99 121 IPR013087 -
Vra7g0740 493 SMART c2h2final6 6 28 IPR013087 -
Vra7g0740 493 MobiDBLite consensus disorder prediction 143 198 - -
Vra7g0740 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Vra7g0740 493 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Vra7g0740 493 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 493 - -
Vra7g0740 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 438 460 IPR013087 -
Vra7g0740 493 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 493 - -
Vra7g0740 493 Gene3D Classic Zinc Finger 1 53 - -
Vra7g0740 493 MobiDBLite consensus disorder prediction 166 197 - -
Vra7g0740 493 MobiDBLite consensus disorder prediction 393 434 - -
Vra7g0740 493 MobiDBLite consensus disorder prediction 402 420 - -
Vra7g0740 493 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Vra7g0740 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Vra7g0740 493 Pfam C2H2-type zinc finger 101 123 - -
Vra7g0740 493 Pfam C2H2-type zinc finger 438 460 - -
Vra7g0740 493 Pfam C2H2-type zinc finger 6 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0740 Vra-Chr7 15004689 15007311 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0740 1 493 C2H2 Transcription Factor Family AT1G26610 42.717 1.36e-91 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra7g0740 zf-C2H2_6 5.3e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0740 - - vun:114177115 791.186