Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0735 ATGGCAAACAAGAGAAAAAGATGGGAAAAGAAGAGTGAAGAAGGGAACACAGAATGGGAAAAACTGAGGGAAGAAGCAGCTTCAATGGCTGCTGCTATTCTTGGTGCTAGAAGAGCTAACAAACGTTACATTGGGGTGAGACAAAGACCCTCAGGGAGATGGGTGGCTGAAATCAAAGACACCATTCAGAACATTAGACTTTGGTTAGGCACTTACGACAATGCTGAAGATGCTGCAAAAGCTTATGATGAAGCAGCACGTTTGCTTCGTGGTGCCAACACTCGCACAAACTTCTTTCCTTCCCAATCTTCTCCTTATGTTTCTGCTCTTCCTCCGAAGGTTGCCAAACTCCTCCTTCTTAGACTCAAAGCTAGAAGCTTTGAATCATGTAGGGTTACCACTCGTTTTCCGAGTAACCACTATGATCAAGAAACCAAACTAGAACCTAAGCCTCAACCAGAACCAGAACCTAAATTATATCTCCAAACAGAAGAACCCCATTACGAGAATTTTGTAGGCATGGAAGTAAATGGGATTGTTGAAGAAAGTTATCATGGTGCTAGTTATAGTTCTTCTGCCATAACTACATGTGACTATAGCTGTGGAACTAATGAAGAGGATTCTAACGAGAAGGGTAGCGGGGAAGATTTCAGCTTGGGTTATAATTTTGCTGAGAATGTTTATGATGAAGAGAAGAAGATTGTGAGTGGTAAAGGTTGTGATTTTCAGTTTTTGGAGTCTGGTGGATCAGTGAGTTACTCTTTTTCTCCGTTTGAGATAGCAGAAGAGATGGTGGGAGCGATAGAGGAAAACAAATATTACGATGTTGATGATTCAGCGTTAGGCAGAGAAACTTTGATGATGAAGTATGAACGTAAATTCTCTGCTTGTTTTTACACCTTAACAGGGGTGTCTGAGTGTTTGAGGCTACAAGTTGGACAAGAAAATGGAAAGGAATTGGAAAATTTTTTAGGATGGTTTGGATTTTGGTTGACGGTTCGTCACTCATTTTCAGCAAAGTATATTTCTACTTTGAACGAATGTTTGACAGAGGAGCACCAATCACTAATTGCAGAAAGGAGGGTTGTTATCTTGGAGGCAAAGTTGGTTGAAGAGAAAGCTAGAAGAAGAACACTAGAGGATGGTGGACACAGTGTGCCACATGTAGAACCCTCTATGAACAGTGGACTTTTTTCCCTGGGAGGCATGTCCATCAATCCACCTCCAATGAAGACATATGTGAGGTTGAGGTCACGAAGGCGTTAA 1266 0.4163 MANKRKRWEKKSEEGNTEWEKLREEAASMAAAILGARRANKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDNAEDAAKAYDEAARLLRGANTRTNFFPSQSSPYVSALPPKVAKLLLLRLKARSFESCRVTTRFPSNHYDQETKLEPKPQPEPEPKLYLQTEEPHYENFVGMEVNGIVEESYHGASYSSSAITTCDYSCGTNEEDSNEKGSGEDFSLGYNFAENVYDEEKKIVSGKGCDFQFLESGGSVSYSFSPFEIAEEMVGAIEENKYYDVDDSALGRETLMMKYERKFSACFYTLTGVSECLRLQVGQENGKELENFLGWFGFWLTVRHSFSAKYISTLNECLTEEHQSLIAERRVVILEAKLVEEKARRRTLEDGGHSVPHVEPSMNSGLFSLGGMSINPPPMKTYVRLRSRRR* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0735 421 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Vra7g0735 421 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Vra7g0735 421 Gene3D AP2/ERF domain 41 100 IPR036955 GO:0003700|GO:0006355
Vra7g0735 421 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Vra7g0735 421 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Vra7g0735 421 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 5 338 - -
Vra7g0735 421 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 338 - -
Vra7g0735 421 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Vra7g0735 421 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Vra7g0735 421 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0735 Vra-Chr7 14882404 14888644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0735 38 103 AP2-EREBP Transcription Factor Family AT5G19790 68.571 1.75e-25 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra7g0735 AP2 7.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0735 K09286 - gmx:100793940 390.963