Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0709 ATGTACATAATAATATGCAGGATGGGCAGGGTAAAACTAAAGATAAAGAGGTTGGAAAACACCAATGGCCGCCAAGCAACATATGCTAAAAGGAAAAATGGAATTATGAAAAAAGCTGCTGAATTATCTATATTGTGTGACATAGATATCATACTTCTCATGTTTGCGCCAAATGGAAAGCCTTCGGTATGTAGGGGGAGACGCAGTAACTTAGAGGAAGTTATTGCGAAGTTTGCTCAACTAACACCTCAGGAAAGGGCAAAAAGGAAGTTGGAGACTCTTGAGGCACTGAAGAAAACGTTTAAGAAGTTAGACCATGATGTAAATATACAAGAATTTCTGGGCACAAGTAGTCAAACTATTGAGGATTTGAGTAATCAAGCCAGGTTATTGCAATCCCAAATTTCTGAGAGTCACAAGAGATTAAGTTATTGGAGTGAGTTTGATAAAATAACCAATGTGGAACAACTAGGACAGATGGAAAATTCACTAAGGGAGTCACTCAATCAAATTCGAAACCGTAAGGAAAATATAAAAAAGCATCAACTTGTCTCGCTGCAATGCAATAATCAGTTCAATGAAATGAATATTCCCTTTAGAATGAGTGCAGAGCAGCATCTCCAACCTCTTTCATGGATTGCGAATGGTGACAGCCAAAATATAGTTTTACCTGAGGACTCAACCATGTTTCTCCACAAAGATGTAGAGGGATCTGCAAGTTCATCTTTTGGGAGTTATGCCAGTTATCTTGGTTCAAGTATGAAGAATGAGATGTCTAACTCGGCACAAGAAAATGGGGTTCTGAGTGAGCTGAGCAGCACTGCAAATATGAGACTACAATTGAATGGACAGTTTCCATACCTGCCATACAATTTTAATTTACTGAATAATTTGAAGTTTCAACCAAATGCAGAGATGAATCCACATGAAAATCCTGTAGATTATCATGTGAATGGAAGTTTAGAAGCACCGAGATCTGGTTTTGATTCTAATCACCATGCTTGGGCTTCCACATCAGGGCCTTGTGGTGTTACAATGTTTGATGACCAGTTGTATGCCCAGGCAAGCTCCACTAAAATGCACTTTGGCTTCACATAG 1098 0.3889 MYIIICRMGRVKLKIKRLENTNGRQATYAKRKNGIMKKAAELSILCDIDIILLMFAPNGKPSVCRGRRSNLEEVIAKFAQLTPQERAKRKLETLEALKKTFKKLDHDVNIQEFLGTSSQTIEDLSNQARLLQSQISESHKRLSYWSEFDKITNVEQLGQMENSLRESLNQIRNRKENIKKHQLVSLQCNNQFNEMNIPFRMSAEQHLQPLSWIANGDSQNIVLPEDSTMFLHKDVEGSASSSFGSYASYLGSSMKNEMSNSAQENGVLSELSSTANMRLQLNGQFPYLPYNFNLLNNLKFQPNAEMNPHENPVDYHVNGSLEAPRSGFDSNHHAWASTSGPCGVTMFDDQLYAQASSTKMHFGFT* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0709 365 CDD MADS 9 63 - -
Vra7g0709 365 SUPERFAMILY SRF-like 9 102 IPR036879 GO:0003677|GO:0046983
Vra7g0709 365 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 8 356 - -
Vra7g0709 365 ProSiteProfiles MADS-box domain profile. 8 60 IPR002100 GO:0003677|GO:0046983
Vra7g0709 365 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Vra7g0709 365 Gene3D - 21 104 IPR036879 GO:0003677|GO:0046983
Vra7g0709 365 PANTHER SERUM RESPONSE FACTOR HOMOLOG 8 356 - -
Vra7g0709 365 Coils Coil 84 104 - -
Vra7g0709 365 Coils Coil 154 181 - -
Vra7g0709 365 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Vra7g0709 365 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Vra7g0709 365 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Vra7g0709 365 Coils Coil 121 141 - -
Vra7g0709 365 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0709 Vra-Chr7 14307205 14310016 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0709 8 354 Type I MADS-box Gene Family AT2G03060 49.206 1.20e-106 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vra7g0709 SRF-TF 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0709 - - gmx:100811701 599.356