Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0699 ATGAGTAATGATCACTCCAACATTTTGAGTCAAGCTTTATGTCTCCCAGAGTATCCAGGTCATGTTAGGGGAATGGGATTTGGAGTCGGTCATAGAGATTATTTCTCGTCCAAAAAGCGTCATACACACCATGAGCATGATAAATTAACTGCCCAATTGAAAGATATGTCAGAAAGAATGGCACGAATGGAAAAGANGATTTCGCTTCAAAACATTGACACACCAAATACTACTGAAGAAGTTAATATTAATAGTGGCCAAGGGAGTTGCACATTGTCATCAATTAGTTTTCCCGAGATAACTGGAATTACACTTCTACCTGGAACCAACAAACTCTATTCTGGAAGCACTGATGGGACCGTTCAAATATGGGATTGTGATAAAGGTCAATGCATTAAAGTCATACATTTTGGCACAGAGATTAACTCTTTGATAAGTGAGGGGCTATGGATTTTTGTGGGTTTGAAAAATGTTGTCAAGGCTTTGAATACCAAGAACGATTTAGAGTTCACTCTTGATGGACCCAAAGGACAGATCTTTCACATGATTGTTGGAAACAACATCCTTTTTGCCGGGGCAGAGGATGGTGTCATTACTGCTTGGAGAGAAAACACTGAAGCTAAGTCTCCTTTTGAATTGGTTGGCTCACTGATCGGCCATACTAAATCTGTGGTTTGCCTAACTGTTGGGCGTAATATGTTGTACTCAGGATCAATGGACCAAAGCATAAAGGCTTGGGACATGGATACATTACAATGTACAATGACACTCAATGAGCATACTGGTGTAGTCACATCCCTTCTTTGTTGGGAGTATTATTTGTTCTCAAGTTCATCTGATGGCACAATTAAAATCTGGGAATGCAAGGAAGTGGGAACTAATTTGACCGTGNTATATACACACAAGGAGAAAAGTGGTATTATATCACTATTTGGGATGCATGATGCAAATCGCAAGCCAATATTGTTTTCCTCTTGTACAGACAATTTAGTTTGCATGTACGAATTGCCATCATTTTTAGAGAGGGGTCGTTTGTTTGCTAAGAAAGAGATTACATCATTTGAATTAGGCGTTGATGGAGGACTCTTCTTTACTGGAGATGGGACTGGTTTGCTTAAGATATGGAAATGGAATGAGTTACCTAAGGTNACATCGAATTAA 1161 0.391 MSNDHSNILSQALCLPEYPGHVRGMGFGVGHRDYFSSKKRHTHHEHDKLTAQLKDMSERMARMEKXISLQNIDTPNTTEEVNINSGQGSCTLSSISFPEITGITLLPGTNKLYSGSTDGTVQIWDCDKGQCIKVIHFGTEINSLISEGLWIFVGLKNVVKALNTKNDLEFTLDGPKGQIFHMIVGNNILFAGAEDGVITAWRENTEAKSPFELVGSLIGHTKSVVCLTVGRNMLYSGSMDQSIKAWDMDTLQCTMTLNEHTGVVTSLLCWEYYLFSSSSDGTIKIWECKEVGTNLTVXYTHKEKSGIISLFGMHDANRKPILFSSCTDNLVCMYELPSFLERGRLFAKKEITSFELGVDGGLFFTGDGTGLLKIWKWNELPKVTSN* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0699 386 ProSiteProfiles Trp-Asp (WD) repeats profile. 100 134 IPR001680 GO:0005515
Vra7g0699 386 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 217 250 - -
Vra7g0699 386 ProSitePatterns Trp-Asp (WD) repeats signature. 234 248 IPR019775 -
Vra7g0699 386 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 98 379 IPR011047 -
Vra7g0699 386 SMART WD40_4 294 335 IPR001680 GO:0005515
Vra7g0699 386 SMART WD40_4 85 125 IPR001680 GO:0005515
Vra7g0699 386 SMART WD40_4 250 287 IPR001680 GO:0005515
Vra7g0699 386 SMART WD40_4 210 247 IPR001680 GO:0005515
Vra7g0699 386 SMART WD40_4 338 376 IPR001680 GO:0005515
Vra7g0699 386 SMART WD40_4 165 202 IPR001680 GO:0005515
Vra7g0699 386 Coils Coil 46 65 - -
Vra7g0699 386 PRINTS G protein beta WD-40 repeat signature 112 126 IPR020472 -
Vra7g0699 386 PRINTS G protein beta WD-40 repeat signature 234 248 IPR020472 -
Vra7g0699 386 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Vra7g0699 386 Gene3D - 61 385 IPR015943 GO:0005515
Vra7g0699 386 PANTHER - 99 382 IPR044715 -
Vra7g0699 386 ProSiteProfiles Trp-Asp (WD) repeats profile. 217 256 IPR001680 GO:0005515
Vra7g0699 386 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 287 IPR001680 GO:0005515
Vra7g0699 386 Pfam WD domain, G-beta repeat 97 125 IPR001680 GO:0005515
Vra7g0699 386 Pfam WD domain, G-beta repeat 252 286 IPR001680 GO:0005515
Vra7g0699 386 Pfam WD domain, G-beta repeat 212 247 IPR001680 GO:0005515
Vra7g0699 386 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 99 382 - -
Vra7g0699 386 Coils Coil 67 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0699 Vra-Chr7 13815605 13824212 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0699 231 375 U-box Gene Family AT1G04510 27.815 1.32e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0699 - - vra:106766093 775.393