Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0697 ATGTCGGTGACTCTGCACACAAACCTAGGTGACATAAAGTGCGAAATCTTCTGCGACGAGGTTCCCAAAACCTCCGAGGTTCACCGAAAGTGCAGAGAAATGCAGCTGATGTGGCAATTGCAATCACATACCATTTTAAAAATCCTCGATTCATGCAGTCATGAATCCGGACTGTTAGGGAATAACTTTTTAGCGCTGTCTGCAAGTGGTTACTATGATGGGACTATATTTCACCGCAACATTAAGGGTTTTATGATTCAAGGTGGAGATCCCACTGGAACTGGCAAAGGGGGAACCAGTATATGGGGCAAGAAATTTAATGACGAGATACGAGAATCACTGAAGCATAATGCTAGGGGAATATTGGCAATGGCTAACAGTGGTCCAAATACTAACGGAAGTCAGTTCTTCATAACTTACGCAAAACAGCCACATTTAAATGGGCTATACACTGTGTTTGGAAGAGTAATTCATGGATTCGAAGTTCTTGATCTCATGGAAAAGACTCAAACTGGAGCAGGAGATCGGCCACTTGCCGAGATAAGGCTCAATCGTGTAACAATACACGCTAATCCTCTTGCTGGTTGA 588 0.4337 MSVTLHTNLGDIKCEIFCDEVPKTSEVHRKCREMQLMWQLQSHTILKILDSCSHESGLLGNNFLALSASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILAMANSGPNTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDLMEKTQTGAGDRPLAEIRLNRVTIHANPLAG* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0697 195 PIRSF Peptidylpro_ismrse 1 192 IPR024936 GO:0003755
Vra7g0697 195 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 72 89 IPR020892 GO:0003755|GO:0006457
Vra7g0697 195 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Vra7g0697 195 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 135 IPR002130 GO:0000413|GO:0003755
Vra7g0697 195 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 147 IPR002130 GO:0000413|GO:0003755
Vra7g0697 195 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 163 IPR002130 GO:0000413|GO:0003755
Vra7g0697 195 CDD Cyclophilin_PPIL3_like 1 188 - -
Vra7g0697 195 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 6 188 IPR002130 GO:0000413|GO:0003755
Vra7g0697 195 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 3 59 194 - -
Vra7g0697 195 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 3 2 27 - -
Vra7g0697 195 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 61 187 IPR002130 GO:0000413|GO:0003755
Vra7g0697 195 Gene3D - 1 195 IPR029000 -
Vra7g0697 195 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 59 194 IPR044666 -
Vra7g0697 195 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 27 IPR044666 -
Vra7g0697 195 SUPERFAMILY Cyclophilin-like 61 191 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0697 Vra-Chr7 13782086 13784998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0697 3 192 U-box Gene Family AT5G67530 42.632 1.82e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0697 K12734 - gmx:100306466 305.064