Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra7g0692 | ATGAGCGATCATCTGGTGCTGTTCGTGGACCGCCTGGTGCGGCCCGTGCCAGTGGTGGAGCCGCTGGCCCAGCACCCGGTCCAGCCCGCTCCCGAGCCCTCAACCCCCGTGGATGAAGCTGCGGCGGGACCCTCCGGCTCCGCTTCGGCGGCCGAGGACGACAGCGTCGACGAGAACGCGTTGCTGCTGCCCTTGGCGGAGTGTCGCATTTGCCAAGAGGAGGATAGCGTCAACAATTTAGAAACTCCTTGCTCCTGCAGCGGTAGTCTTAAGTATGCTCATAGAAAGTGCGTCCAGCATTGGTGTAATGAGAAAGGTGATATAATTTGTGAGATTTGTCACAAGTCGTATGAACCTGGTTATACTGCCCCGCCACCTCGTCTTCAACCTGAAGAAACTACCATTGACATAGGTGGAGGCTGGACAATCTCTGGCATGCCATTGGATTTGCGTGACCCCCGACTCTTGGCAATTGCCGAGGCAGAACGTCAATTCTTGGAAGCTGAATATGATGGATATGCTGCTTCAAACGCCAATGGAGCTGCATTTTGTCGTTCAGTTGCTCTAATTTTAATGGCCCTTTTACTTTTGAGGCATGCACTTTCTGTCACGGATGCTGATGCTGAAGATGATCCATCTACCTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCCTGGGCAATCAGTATTTTGCAACGCAGGCGACAAAGACAAGAGGCTGCAGCACTAGCAGCAACCCAAGTTGCGTTTGTTCTACAATCTGAACAACGTAGGGGTCTGCAGTTTGCCATAGCACCAGCACCAACAATTAACACACACCAGTAA | 852 | 0.5176 | MSDHLVLFVDRLVRPVPVVEPLAQHPVQPAPEPSTPVDEAAAGPSGSASAAEDDSVDENALLLPLAECRICQEEDSVNNLETPCSCSGSLKYAHRKCVQHWCNEKGDIICEICHKSYEPGYTAPPPRLQPEETTIDIGGGWTISGMPLDLRDPRLLAIAEAERQFLEAEYDGYAASNANGAAFCRSVALILMALLLLRHALSVTDADAEDDPSTFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSEQRRGLQFAIAPAPTINTHQ* | 284 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra7g0692 | 283 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 56 | 122 | IPR013083 | - | |
| Vra7g0692 | 283 | MobiDBLite | consensus disorder prediction | 24 | 55 | - | - | |
| Vra7g0692 | 283 | CDD | RING_CH-C4HC3_MARCH | 68 | 114 | - | - | |
| Vra7g0692 | 283 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 60 | 120 | IPR011016 | GO:0008270 | |
| Vra7g0692 | 283 | Pfam | Protein of unknown function (DUF3675) | 119 | 237 | IPR022143 | - | |
| Vra7g0692 | 283 | Coils | Coil | 156 | 176 | - | - | |
| Vra7g0692 | 283 | SUPERFAMILY | RING/U-box | 67 | 118 | - | - | |
| Vra7g0692 | 283 | Pfam | RING-variant domain | 68 | 113 | IPR011016 | GO:0008270 | |
| Vra7g0692 | 283 | SMART | ringv_2 | 67 | 114 | IPR011016 | GO:0008270 | |
| Vra7g0692 | 283 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED | 1 | 273 | - | - | |
| Vra7g0692 | 283 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 1 | 273 | IPR033275 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra7g0692 | Vra-Chr7 | 13637314 | 13640017 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra7g0692 | 57 | 143 | C3H Transcription Factor Family | AT2G37950 | 35.354 | 1.44e-08 | 52.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra7g0692 | - | - | ahf:112734090 | 437.187 |