Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0691 ATGGACCTGACCTCCAGCTGTACCCACACAATACAAACCTTTGATGCTGATACTAAGACCACACCACCCGTCAACCCCACCAATAATACCACCCCAAAGTCTCTATCTTTCACCAACGCCACCCCTAAGCGCCACCCCTCCACCACCGCTGCTCCACCGCCTCAACCACCCTCCATGCTCGTTACCTACAAAGAATGCCTCAAAAACCACGCCGCCAGCCTAGGTGGCCATGCACTTGATGGCTGTGGCGAGTTCATGCCTTCCTCCTCCACCAACCCCACCGATCCTCGCTCCCTCAAGTGCGCCGCCTGTGGCTGCCACCGCAACTTCCACCGCCGTGATCCTCAGGAACACAGTAACCTCAACAACAACAACAACAACAACAACATTCACGGCGCCAACCCCAACACCGTCGCCACCACCAACAATAACCCGACTTTCCTAAGCTGCATCTACACCCCTTCGGCACCGGCACCAATCTCTCAGCGAGCCATGAGCCAAAGCACGAGTCCGAGCCTGAGTTCGAGCCCGAGCCACAGTCCGAGCCCAATGTCAAGCCCTTCACCTCCTCCACTCTCCCACGTGCCACCGTACCACGCTTCGGCACCCCACATGCTTTTAGCCCTCGGCACTGGCTACTCTACACCCTCCGATGAACACCCCCACCACCGAGGCCTAACCTTTTCGAGCGTGATGTTGAAGAGCGAGAACCCGAAGAAGAGGTACAGGACCAAGTTCAGCAAGGAGCAGAAGGAGAAGATGCAAAACTTCTCTGAGAAACTGGGGTGGAGAATGCAGAAAGGGGATGATGGATTGGTCCAGCAATTCTGCAATGACATTGGGGTCTCTAGAGGGGTCTTCAAGGTGTGGATGCACAACAACAAGAACACCTTTAGGAGAAGATTGGATCAAGGGGAAAATGCAAATCCAAATGCAAATGCAAATTCTCCTCAAAGTATCGGAGATCATGATGACGGCAATAACACCAGTGGTGGAGGTGGATTTGATAGTGATATCAACAACCCCTACAACCCAAATAGCACCAACAATGACATTCACATGAATGAAGGAGATGGATGTGGCAATGTTCATGTCTCTCTTAATGGACTGTCATCTTAG 1119 0.5282 MDLTSSCTHTIQTFDADTKTTPPVNPTNNTTPKSLSFTNATPKRHPSTTAAPPPQPPSMLVTYKECLKNHAASLGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRRDPQEHSNLNNNNNNNNIHGANPNTVATTNNNPTFLSCIYTPSAPAPISQRAMSQSTSPSLSSSPSHSPSPMSSPSPPPLSHVPPYHASAPHMLLALGTGYSTPSDEHPHHRGLTFSSVMLKSENPKKRYRTKFSKEQKEKMQNFSEKLGWRMQKGDDGLVQQFCNDIGVSRGVFKVWMHNNKNTFRRRLDQGENANPNANANSPQSIGDHDDGNNTSGGGGFDSDINNPYNPNSTNNDIHMNEGDGCGNVHVSLNGLSS* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0691 372 SUPERFAMILY Homeodomain-like 234 300 IPR009057 -
Vra7g0691 372 MobiDBLite consensus disorder prediction 14 46 - -
Vra7g0691 372 MobiDBLite consensus disorder prediction 159 199 - -
Vra7g0691 372 Pfam ZF-HD protein dimerisation region 61 115 IPR006456 -
Vra7g0691 372 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 329 - -
Vra7g0691 372 MobiDBLite consensus disorder prediction 14 58 - -
Vra7g0691 372 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 63 114 IPR006456 -
Vra7g0691 372 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 62 114 IPR006456 -
Vra7g0691 372 MobiDBLite consensus disorder prediction 112 141 - -
Vra7g0691 372 MobiDBLite consensus disorder prediction 304 355 - -
Vra7g0691 372 MobiDBLite consensus disorder prediction 182 197 - -
Vra7g0691 372 MobiDBLite consensus disorder prediction 119 141 - -
Vra7g0691 372 MobiDBLite consensus disorder prediction 159 181 - -
Vra7g0691 372 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 239 296 IPR006455 -
Vra7g0691 372 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9-LIKE 1 329 - -
Vra7g0691 372 MobiDBLite consensus disorder prediction 304 357 - -
Vra7g0691 372 Gene3D - 230 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0691 Vra-Chr7 13564067 13565757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0691 59 298 ZF-HD Transcription Factor Family AT1G69600 47.773 6.35e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vra7g0691 ZF-HD_dimer 3.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0691 - - vra:106766949 681.404