Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0687 ATGACACAGCTACCATCATCATCATCTTCTTCTTCTTCCACCTATGAAGGGACCCATGATGTGTTCCTCAGTTTCAGAGGCGATGACACTCGAAGTGGCTTCACTGGCAACCTATACAAGTCTCTTTGTGACAGGGGAATTCACACCTTCATAGATGATGAAGGGCTTAGAAAAGGGGAAGAGATTAGACCTGCTCTTTTCAAGGCTATTGAGCAGTCTAGAATTGCCATTGTTGTTTTCTCTGAAAATTATGCTGACTCAACTTACTGTCTTGAAGAACTTATCGTGATCCTTGAGTGCATACTTAGAAAAGGTCGATTGGTTTGGCCAGTGTTTTACGGGGTTACTCCATCTTATGTGCGGTTTCAGAAGGGTTCTTATGGGAAAGCATTGGCCAAGCATGGAGAAAGATTCAAGAATGACCAGGAGAAGCTGCAAAAATGGAAGCTAGCTCTTCAAGTAGCTGCTGGCTTGTCCGGTTCGCATTTCAAGCTCAAACAAGGGTATGAACATGAACTTATTCGGACAATTGTTGAAGAGGTTTCCAAAAAGATAAATCGTAGCCCTTTACACGTGGCTAATTATCCAATTGGATTGGAATCTAGAGTGCAAGACGTGAAGTTACTTTTGGATGTTGGATCTAATCGGGGAGTAAGCATGGTTGGGATTTTTGGAATCGGGGGAATAGGTAAGACTGCAATTGCATGTGCAGTGTACAATGCCATTGCTGATCAATTTGATGTTCAGTGTTTCCTTGGTGATATTAGACAAAAATCAATGAAGTATGACTTGGTACAACTTCAGGAGACAGTACTTTCTGAAATGGTTGGGGAGAAAAGTATCAAGTTGGGGAGTATTAATAGGGGAATGGCAGTTATGAAAAGCAAGCTTCAAAGAAAGAAAGTTCTTTTGATTCTTGATGATGTTGATAAATTGGAGCAATTAAAGGCACTTGCTGGTGATCCTTCCTGGTTTGGTGATGGCAGCAAAATCATTGTCACGACAAGGAACAGACGTTTTTTACGAGTACATGGTGTTGAAAGAACATACGAAGCCAAAGGGTTGGATGATAAAGAAGCTCTTGAGTTGTTTAGTTGGCATGCTTTTAAAAGGAATGAAGTCGGTCCAGGTTACTTGGATATCTCTAAGCGTGCAGTATTTCGTTGTAATGGCCTTCCATTGGCTTTAGAAATAATAGGTTCTAACTTGAATGGTATAACAATGTCTGAATGGGAAGCAGCATTAGATACCATTGAAAGAATTCCAGATGAAGATATTCAAGAAAAACTAAAAGTAAGCTATGATGGTTTGAAGGGAAATGAAAAGGAAGTTTTCCTTGACATGGCTTGTTTCTTTAGAGGCTACCATTTGAAAGATGTCATAAATTTATTGCTCCAAAGTCGTGGTTTCTCACCAGAGTATGTTATTCGCATGTTGGTGGATAAATCTCTCATAAAAATCGATCAATATGGTTTTGTGCAAATGCATAACTTGGTAGAGGACATGGGCAGAGAAATTGTCAGGCAAGAATCACCATCAGAGCCTGGAAAACGCAGTAGATTATGGCTTTATGAGGATATTGTTGATGTTTTAGAAAATGACAAGGGAACTGATACAATTGAAGTAATCATGCTACACTTGCCAAAGAATAGGGAAGTTCTATGGAATGGAAGTGAGCTCAAGAAGATGACAAACTTAAAAATGCTAACTATTGAAAATGCCGACTTTTCTAGAGGCCCTGAATATCTCCCAAGTAGTTTGAGAGTACTAAAGTGGCGGGGATATCCTACACAGTCTCTGCCACCTGAATATGATCCAAGGAGACTTGTTATGTTAGACTTGTCTATGAGTCGCAATATATTGGGCAAACAACTCAACCTCATGAAGTTCGAGTCTTTGAGTGAAATGGTTTTAAGAGGTTGCAGATTCATAAAACAGGCACCTGACATGTCTGGAGCCAAAAATTTAAGAAAGCTGTGTCTTGATAACTGCAAGAATTTAGTACAAGTTCATAATTCCATCGGACTTCTTGACAAACTAACATGGTTCACTGCTATTGGATGCACCAGTCTAAGGACTCTTCCCCATAGCTTCAAGTTAACATCACTTGAATATCTGTCTCTCAGAAAATGTTCAAGCCTCCAGCGTTTGCCAAACATATCAGAAGAAATGAAACATATGAAAAATCTTGACCTTTGTGGAACTGCTATTGAGCAATTGCCATATTCGTTTAGGAAACTCACTGGGCTTAAATATTTAGTACTAGACAAGTGCAAGAGGCTTAATCAGATCCCAATAAATATTTTGATGTTACCAAAACTTGAGAGATTGACAGCTGTAAAATGTGGAAGATATGTAAATTTGATCCTTGGTAAAAGTGAAGAACAAGTAAGATTGGCTTCATCTGACTCTTTGATAGATTTTAGGTTAAACTACAATGGTTTGACGCCCACCAGCTTCCCCAATGTAGAGTTCTTAGTCCTAACTGGCTGTAGTTTCAAAGTCCTTCCTGAATGCATCAGCCAATGTCGCTTTCTAAAGAATCTAGTTTTGGACAACTGCAAGGAGCTTCAAGAAATCAGAGTGGTTCCTCCAAAGATAAAATATCTGTCGGCAATAAACTGTACATTATTGTCTCATGAGTCTCAAAACATGTTGTTGAATCAGAGATTACATGAGGGTGGGGGAACAGATTTTTCCCTTCCAGGAACAAGGTTACCAGAATGGTTTGATCATTGTACTAGGGGGCCATCCCTGTCTTTCTGGTTTCGTAACAAATTTCCAAGGATGACTCTAGCTGTTGTTGGAGTTTTAGACAAGCAAGGCAGTTTTCCCATGTCAAGATTCCACCTGCTCATCAATGGCATTCAAAAGCTGCATTGCCATTTCACTGTGCAATCAAAATTAATCACATATCATATATTCTTGTCCGATGTGCTGCTAAAGTCCTACAATGGTGGATTGGAAAGTGTGTATGGGGAGGATGGGTGGAACCATGTTGAGGTTTCATACGTGGGACCAAGAGTCTTTCCACATTCATGCAGAACCAAGAAAGGAACCATTAAATGGATGGGGGTTCATGTTCACAAGCAAAAAACAAACATGCAAGATATTCGGTTCATAAATCCTTGGTTTCCGAAAAGAGCACATAGTGAAGTTTCCAAGGCTGATCTGCAAGAAAGTTTTCAGTCATTGCCCAAAAGAATCCGTGTATCACATCGCAAGGAAATTTGTGAGGCACCACAGACGAAGCAGCATGAAGCTAACAGCAGTTATCATGGTGTATCACAGAGGCTATGGTTGGCAATTTGTAGCATTGCAGCTCCTCTAAATGTTAAAGTACTGATGTGGAATATTTGTCAGGATGATTTGCCAACTTTTGAATATCTTTTCAGGAGAAAGCTTGTACTTAGTCCGCTCTGCCCCATCTGTGGAACGGAGCCTGAAACTGTCGAACATGTGTTCCTGTTTTGTCCATGGACACGACCCCTTTGGTTTGGAAGTGATTTCCAGTGGTGCATTGATGTTAAAGAAGTTCAAAGCTTTCAACTTTGGCTTTGGCATAAACTGATGGAGATTCAAAGGGTATATCCAGAAAATGCCAACCGAATATCGGCTCAGGTAGGAAGCATTTGTTGGTCTATCTGGAAAGGAAGGAATGAATTTGTTCTTGAAGGCAAACCTGTCAATCCTTTGATTTTAAGGTAG 3708 0.4005 MTQLPSSSSSSSSTYEGTHDVFLSFRGDDTRSGFTGNLYKSLCDRGIHTFIDDEGLRKGEEIRPALFKAIEQSRIAIVVFSENYADSTYCLEELIVILECILRKGRLVWPVFYGVTPSYVRFQKGSYGKALAKHGERFKNDQEKLQKWKLALQVAAGLSGSHFKLKQGYEHELIRTIVEEVSKKINRSPLHVANYPIGLESRVQDVKLLLDVGSNRGVSMVGIFGIGGIGKTAIACAVYNAIADQFDVQCFLGDIRQKSMKYDLVQLQETVLSEMVGEKSIKLGSINRGMAVMKSKLQRKKVLLILDDVDKLEQLKALAGDPSWFGDGSKIIVTTRNRRFLRVHGVERTYEAKGLDDKEALELFSWHAFKRNEVGPGYLDISKRAVFRCNGLPLALEIIGSNLNGITMSEWEAALDTIERIPDEDIQEKLKVSYDGLKGNEKEVFLDMACFFRGYHLKDVINLLLQSRGFSPEYVIRMLVDKSLIKIDQYGFVQMHNLVEDMGREIVRQESPSEPGKRSRLWLYEDIVDVLENDKGTDTIEVIMLHLPKNREVLWNGSELKKMTNLKMLTIENADFSRGPEYLPSSLRVLKWRGYPTQSLPPEYDPRRLVMLDLSMSRNILGKQLNLMKFESLSEMVLRGCRFIKQAPDMSGAKNLRKLCLDNCKNLVQVHNSIGLLDKLTWFTAIGCTSLRTLPHSFKLTSLEYLSLRKCSSLQRLPNISEEMKHMKNLDLCGTAIEQLPYSFRKLTGLKYLVLDKCKRLNQIPINILMLPKLERLTAVKCGRYVNLILGKSEEQVRLASSDSLIDFRLNYNGLTPTSFPNVEFLVLTGCSFKVLPECISQCRFLKNLVLDNCKELQEIRVVPPKIKYLSAINCTLLSHESQNMLLNQRLHEGGGTDFSLPGTRLPEWFDHCTRGPSLSFWFRNKFPRMTLAVVGVLDKQGSFPMSRFHLLINGIQKLHCHFTVQSKLITYHIFLSDVLLKSYNGGLESVYGEDGWNHVEVSYVGPRVFPHSCRTKKGTIKWMGVHVHKQKTNMQDIRFINPWFPKRAHSEVSKADLQESFQSLPKRIRVSHRKEICEAPQTKQHEANSSYHGVSQRLWLAICSIAAPLNVKVLMWNICQDDLPTFEYLFRRKLVLSPLCPICGTEPETVEHVFLFCPWTRPLWFGSDFQWCIDVKEVQSFQLWLWHKLMEIQRVYPENANRISAQVGSICWSIWKGRNEFVLEGKPVNPLILR* 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0687 1235 SUPERFAMILY L domain-like 513 884 - -
Vra7g0687 1235 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 160 IPR035897 -
Vra7g0687 1235 PANTHER ARCHAEAL ATPASE 29 1004 - -
Vra7g0687 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 447 IPR027417 -
Vra7g0687 1235 Pfam NB-ARC domain 201 430 IPR002182 GO:0043531
Vra7g0687 1235 Gene3D - 354 438 IPR042197 -
Vra7g0687 1235 Gene3D - 14 188 IPR035897 -
Vra7g0687 1235 PRINTS Disease resistance protein signature 220 235 - -
Vra7g0687 1235 PRINTS Disease resistance protein signature 296 310 - -
Vra7g0687 1235 PRINTS Disease resistance protein signature 389 403 - -
Vra7g0687 1235 PRINTS Disease resistance protein signature 698 714 - -
Vra7g0687 1235 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 29 1004 IPR044974 GO:0006952
Vra7g0687 1235 Pfam zinc-binding in reverse transcriptase 1098 1165 IPR026960 -
Vra7g0687 1235 Pfam TIR domain 19 188 IPR000157 GO:0007165
Vra7g0687 1235 Gene3D - 189 348 IPR027417 -
Vra7g0687 1235 ProSiteProfiles TIR domain profile. 17 185 IPR000157 GO:0007165
Vra7g0687 1235 SUPERFAMILY "Winged helix" DNA-binding domain 425 532 IPR036390 -
Vra7g0687 1235 Gene3D Ribonuclease Inhibitor 544 722 IPR032675 -
Vra7g0687 1235 Gene3D Ribonuclease Inhibitor 723 915 IPR032675 -
Vra7g0687 1235 SMART till_3 18 158 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0687 Vra-Chr7 13508936 13514734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0687 5 782 WRKY Transcription Factor Family AT4G12020 32.918 3.19e-89 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0687 - - var:108319971 2415.96