Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0664 ATGAATGTTATTGATCGATGTTGGAGGCCAAATCATGAATGGAGGAGACATCGATCTCAGTTAGCCACATGTTCTATGGGTTATGCCGGTAAGATGATAAATAACATTGGTAATGACCTTATTCGTTATAAAGTTACTGACTCTAGTGATGATCCTATAAACCCAAAACCCAACACCTTGAGATATGGAACTTCTATTATTAAAGGTAAAGTATGGATCACATTCCAGAAAGACATGCTCATTACATTAGAGAAACCACTTCTCATTAGTAGTTTTACTACTATCGATGGTCGAGGTGTTAATGTCCACATTGCTAATAATGCATGTTTAATGATCTTTAAGGCAACCAACATAATTATCCATAACATTCAAGTTCATCATTGTAAACCCAAACCCCCTGGGATCGTTATGGGGCCCGAAGGAAAAGTGATTCCTTTAGGTCATGTAGACGGAGATGCAATAAGATTGGTTACTGCTTCAAAGATTTGGATTGACCATAATACATTGTATGATTGTCAAGACGGTTTGCTAGATGTAACACGAGGTTCCACTAATGTGACTATCTCCAATAATTGGTTCAAAAACCAAGATAAAGTCATGCTTCTTGGACATGATGATGGATACGTGAGAGACAAATATATGAAGGTTACATTATTGTACAACCATTTTGGACCTAATTGTAATCAACGTATGCCAAGGATTCGTCATGGATATGCGCATGTAGCCAATAATCTTTATCAAGGATGGCTTCAGTATGCCATTGGTGGAAGCATGGAACCAAGCCTCAAAAGTGAAGCTAATCTCTTTGTAGCACCAACAATAGGAAATAAGGAGGTGGCATGGATAAAAAAGGATGATAAAAGTGGAGATAGATTGGATTTTCATTCAGTAAATGATATGTTTGAAAATGGAGCTTCATTCACTATAACAAAAGGAGAACGTGTGCAAAAACCAAATTATAGCAAGGAACAAAATTTTGAAGTTGTTGATGCCAAATTTGTAAGATCATTGACACGCTCATCGGGCGTGTTACGACTTAATAAAAATCCAAATATACTAATTAACTAA 1068 0.3642 MNVIDRCWRPNHEWRRHRSQLATCSMGYAGKMINNIGNDLIRYKVTDSSDDPINPKPNTLRYGTSIIKGKVWITFQKDMLITLEKPLLISSFTTIDGRGVNVHIANNACLMIFKATNIIIHNIQVHHCKPKPPGIVMGPEGKVIPLGHVDGDAIRLVTASKIWIDHNTLYDCQDGLLDVTRGSTNVTISNNWFKNQDKVMLLGHDDGYVRDKYMKVTLLYNHFGPNCNQRMPRIRHGYAHVANNLYQGWLQYAIGGSMEPSLKSEANLFVAPTIGNKEVAWIKKDDKSGDRLDFHSVNDMFENGASFTITKGERVQKPNYSKEQNFEVVDAKFVRSLTRSSGVLRLNKNPNILIN* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0664 355 Pfam Pectate lyase 89 269 IPR002022 -
Vra7g0664 355 Gene3D - 1 345 IPR012334 -
Vra7g0664 355 SMART amb_all 78 275 IPR002022 -
Vra7g0664 355 SUPERFAMILY Pectin lyase-like 2 318 IPR011050 -
Vra7g0664 355 PANTHER PECTATE LYASE 1 348 - -
Vra7g0664 355 PANTHER PECTATE LYASE 18-RELATED 1 348 IPR045032 GO:0030570
Vra7g0664 355 PRINTS Pollen allergen Amb family signature 24 41 IPR018082 -
Vra7g0664 355 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Vra7g0664 355 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Vra7g0664 355 PRINTS Pollen allergen Amb family signature 230 249 IPR018082 -
Vra7g0664 355 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Vra7g0664 355 PRINTS Pollen allergen Amb family signature 292 316 IPR018082 -
Vra7g0664 355 PRINTS Pollen allergen Amb family signature 323 346 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0664 Vra-Chr7 13071915 13073359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0664 32 279 Polysaccharide Lyase AT5G09280 70.968 2.52e-140 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0664 K01728 - gmx:100780437 602.438