Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0659 ATGGCTGATCCTCAGAAAACTGCTCTTGGCGAGAGAGATATCGAGCAGGCACTTACATTTCTTAAGAAAGGCTCGCATCTTCTAAAGTACGGGCGAAGAGGGAAGCCGAAGTTCTGCCCATTTAGGCTTTCCAATGATGAGTCTCTACTGTTATGGTACTCTGGCAAGGAAGAGAAAAAGCTTAAGCTTGGTACAGTTTCAAGGATCATTCCAGGGCAGAGAACTGCAACATTTCAGCGGTATCCACGACCTGAGAAGGAATATCAATCATTTTCTCTTATATACAACGACAGATCCTTGGATTTGATATGCAAGGACAAAGAAGAAGCTGAAATCTGGTTTATTGGTCTTAAGGCATTAGTTACTCGAGGGAACAATCACAAGTGGAGATTTGAGTCAAGAACTGATGACAGTCAGTGTTCTGATAGTCCAAAATCTAGCACACGAAAATCCACTCCTTCAAATACACCATTTTCTGACCCTGGAGATGGTGGTGGAGCTGCTTTTGATGTGAAAAATAGATGGGTTAAGGCTTTCTCTGAAATAATTTCGTTCAATGCAGCTAGCAAGGGTTCCAGTCAAGCTGAATCTATTGCAAATTCCTCCTTATCCTCTGGATCTGCAGATAACTCAAGCAATCGAAATTCTTCATCTGAGGCATTTCGAGTTAGTTTGTCTAGTGCTGTAAGTTCCTCCAGCCAGGGTTCTTATCATGAAGATTTTGATTCCCTAAGTGATATTTTTATTTGGGGAGAAGGTATTGGCAATGGAATTCTTGGTGGTGGTGTACATAGAGTTGGAGCCTTGTCTAGTTCTGAGATGGATGCTTTCCTTCCCAAGGCATTGGAATCAAAGTTAGTTCTAGATGTTCAAAGTATTAGTTGTGGCTACAGACATGCTATTCTGGTTACCAAGCAGGGAGAGATATTTAGTTGGGGAGAGGAGTCAGGAGGTAGGCTTGGACATGGTGTAGAAATGGATGTTCGTCACCCTAAACTTGTTGAAGCTCTTGGTGGCTTGAATATTGAGTTAGTAGCATGTGGAGAATATCATACATGCGCTGTTACTTATTCTGGGGATCTTTATACATGGGGTGATGGTGCTCACAATTCTGGCATGCTTGGACATGGAATTGAAGCCACTCACTGGGTTCCTAAGAAAGTAAGTGGTAATTTGGAGGGTTTACGTGTATCTTATGTGTCCTGTGGACCTTGGCACACAGCTATTGTTACATCAGCTGGGCAATTGTTCACATTTGGCGATGGAACTTTTGGTGCCTTAGGACACGGAAATCATAGTAGTGCAACTATTCCTCAGGAAGTGGAAACTTTGAGAGGGTTTAGAACAACCAGAGTTGCTTGTGGTGTTTGGCACACTGCTGCAGTTGTGGAGGTGTTAACTGAGTCTGTGGAATCTTCTACAAGCTCATCTTGCAAAAGACTGTTCACGTGGGGTGATGGAGATAAAGGCCAACTTGGACATGCTGATAAGAAACCTAGACTAGTTCCTGAGTGTGTAATTGCATTGAGTACTGAAAACATTAGCCAGGTGGCTTGTGGCCACAGTCTTACAATTGCTTTGACAACATCAGGACGTGTATATACAGTGGGAAGCACTGCTTATGGGCAACTTGGGTGTCCTGCATCTGATGGAAAAGTCCCTACGTGTGTTAAAATTGCTGACAGTTTTGTAGAAGATATTGCCTGTGGTTCATATCATGTTGCAGTCTTGACTTCCAAGGCAGAGGTTTACACATGGGGAAAGGGTTTGAATGGGCAATTAGGTCATGGAGACAATGATCACAGGAATAAACCCACACTTGTTGAGTTTTTAAAAGATAAACAAGTGAAAAGTGTATTTTGTGGTTCAAACTTTACTGTTGCTGTATGTCTTCATAAATGGATCCCAAGTGTTGATCAATCTACATGTTTTGGATGTCGTAATTCATTTAATTTCAGAAGAAAACGTCATAATTGTTACAATTGTGGACTTGTGTTTTGCAAATCTTGCACCAGCAAGAAATCTTTAAAAGCTTCCCTTGCTCCCAATGCTTGTAAGCTGTATCGAGTTTGTGAGGACTGTTATCTCAAACTTAAAAAATCTTCTGAATCAGTACCCTTGGTGCAAACTCCTCCTAGCTTGAGAAGTGTAAGTTTGCAAGAGAACAGAACCACTAAAATACAGGGAACACTATTGAGGCTTTCATCTTTTGCTTCTATTCTTCATACAGTAAGTGGTCAATCCAAGCTTCCAGATTCACAAGATATCCATCGTTCCCCGGCTTCAAATGGAAAATTAGAGATGAGGGGTTTTGCTTCTTCAAAATCATCAAATTCTGTTTTTGTGGATTCTAAGAAACACATTTCATTTTCTGAGCCTGCTGCAAGAATATCTTGTCAATCAACATCTCCAGTTTCATCAAAGTCAAGTCCAAGAGAATCGTATGAAGATATCAATGATGATTTAAAGCACAGAAATGATATTTTAAGTCAAGAAGTTATAAGTTTAAGGACTCAGGTCGAAGATCTTACTCGAAAATCGAAAAGTTTAGAGGCTGAACTTGAGAGAACATCAAAGCAATTGAAGGAAGTGACTACAGTAGCTGCAGATGAAGCTGGAAAGTGTATATCAGCAAAAGAGGTCATAAAATCATTGACTGCACAGTTAAAGGAAATGGTGGAAAGGCTGCCAGAAGGACACAATGCTGACTCCAGTACAGAGCTCTGTGCTGAAACCACTAAAAATATTCTAGATCATTCCTTGGATGTGAGCCATATAAGAAACACTGTCATGCTAAAAAATGAAGGCAGCAGCAATGTAGCAAATCTGATATTACCTAATGGTGCCAAAACACAAAGTGGAAAGGCAGAGTGGGTAGTGCAAGATGAACCAGGTGTGTTCGTAAGTTTGTCTCCCCAGCCAGGTGGTGGTAATGAGCTTAAGCGTGTTCGCTTCAGTCGAAAGCATTTCACAGAAGAAGAAGCTGAGAAGTGGTGGACGGAAAATGGAAGCAAAATACTGGAGCGGCACAATATAGTTGCTTTATAG 3048 0.4117 MADPQKTALGERDIEQALTFLKKGSHLLKYGRRGKPKFCPFRLSNDESLLLWYSGKEEKKLKLGTVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKEEAEIWFIGLKALVTRGNNHKWRFESRTDDSQCSDSPKSSTRKSTPSNTPFSDPGDGGGAAFDVKNRWVKAFSEIISFNAASKGSSQAESIANSSLSSGSADNSSNRNSSSEAFRVSLSSAVSSSSQGSYHEDFDSLSDIFIWGEGIGNGILGGGVHRVGALSSSEMDAFLPKALESKLVLDVQSISCGYRHAILVTKQGEIFSWGEESGGRLGHGVEMDVRHPKLVEALGGLNIELVACGEYHTCAVTYSGDLYTWGDGAHNSGMLGHGIEATHWVPKKVSGNLEGLRVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGNHSSATIPQEVETLRGFRTTRVACGVWHTAAVVEVLTESVESSTSSSCKRLFTWGDGDKGQLGHADKKPRLVPECVIALSTENISQVACGHSLTIALTTSGRVYTVGSTAYGQLGCPASDGKVPTCVKIADSFVEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNDHRNKPTLVEFLKDKQVKSVFCGSNFTVAVCLHKWIPSVDQSTCFGCRNSFNFRRKRHNCYNCGLVFCKSCTSKKSLKASLAPNACKLYRVCEDCYLKLKKSSESVPLVQTPPSLRSVSLQENRTTKIQGTLLRLSSFASILHTVSGQSKLPDSQDIHRSPASNGKLEMRGFASSKSSNSVFVDSKKHISFSEPAARISCQSTSPVSSKSSPRESYEDINDDLKHRNDILSQEVISLRTQVEDLTRKSKSLEAELERTSKQLKEVTTVAADEAGKCISAKEVIKSLTAQLKEMVERLPEGHNADSSTELCAETTKNILDHSLDVSHIRNTVMLKNEGSSNVANLILPNGAKTQSGKAEWVVQDEPGVFVSLSPQPGGGNELKRVRFSRKHFTEEEAEKWWTENGSKILERHNIVAL* 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0659 1015 Pfam Transcription factor regulating root and shoot growth via Pin3 955 1010 IPR013591 -
Vra7g0659 1015 SUPERFAMILY FYVE/PHD zinc finger 633 709 IPR011011 -
Vra7g0659 1015 Pfam Transcription factor BRX N-terminal domain 870 898 IPR027988 -
Vra7g0659 1015 Pfam FYVE zinc finger 633 699 IPR000306 GO:0046872
Vra7g0659 1015 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 293 303 IPR000408 -
Vra7g0659 1015 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 646 705 IPR013083 -
Vra7g0659 1015 ProSiteProfiles BRX domain profile. 956 1011 IPR013591 -
Vra7g0659 1015 PRINTS Chromosome condensation regulator RCC1 signature 309 325 IPR000408 -
Vra7g0659 1015 PRINTS Chromosome condensation regulator RCC1 signature 359 375 IPR000408 -
Vra7g0659 1015 PRINTS Chromosome condensation regulator RCC1 signature 400 416 IPR000408 -
Vra7g0659 1015 PRINTS Chromosome condensation regulator RCC1 signature 416 430 IPR000408 -
Vra7g0659 1015 PRINTS Chromosome condensation regulator RCC1 signature 520 538 IPR000408 -
Vra7g0659 1015 PRINTS Chromosome condensation regulator RCC1 signature 576 597 IPR000408 -
Vra7g0659 1015 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 452 462 IPR000408 -
Vra7g0659 1015 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 637 699 IPR017455 -
Vra7g0659 1015 Gene3D - 465 645 IPR009091 -
Vra7g0659 1015 CDD PH_PLC_plant-like 12 122 - -
Vra7g0659 1015 SUPERFAMILY RCC1/BLIP-II 245 634 IPR009091 -
Vra7g0659 1015 Coils Coil 812 867 - -
Vra7g0659 1015 Gene3D - 186 464 IPR009091 -
Vra7g0659 1015 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 307 358 IPR000408 -
Vra7g0659 1015 SUPERFAMILY PH domain-like 13 121 - -
Vra7g0659 1015 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 531 580 IPR000408 -
Vra7g0659 1015 Pfam Pleckstrin homology domain 15 121 IPR001849 -
Vra7g0659 1015 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 479 530 IPR000408 -
Vra7g0659 1015 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 581 632 IPR000408 -
Vra7g0659 1015 MobiDBLite consensus disorder prediction 799 819 - -
Vra7g0659 1015 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 1009 - -
Vra7g0659 1015 CDD FYVE_like_SF 642 695 - -
Vra7g0659 1015 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 359 413 IPR000408 -
Vra7g0659 1015 MobiDBLite consensus disorder prediction 140 159 - -
Vra7g0659 1015 Gene3D - 13 152 IPR011993 -
Vra7g0659 1015 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 414 465 IPR000408 -
Vra7g0659 1015 Pfam Regulator of chromosome condensation (RCC1) repeat 307 355 IPR000408 -
Vra7g0659 1015 Pfam Regulator of chromosome condensation (RCC1) repeat 414 462 IPR000408 -
Vra7g0659 1015 Pfam Regulator of chromosome condensation (RCC1) repeat 530 577 IPR000408 -
Vra7g0659 1015 Pfam Regulator of chromosome condensation (RCC1) repeat 358 409 IPR000408 -
Vra7g0659 1015 Pfam Regulator of chromosome condensation (RCC1) repeat 480 527 IPR000408 -
Vra7g0659 1015 Pfam Regulator of chromosome condensation (RCC1) repeat 582 629 IPR000408 -
Vra7g0659 1015 MobiDBLite consensus disorder prediction 132 164 - -
Vra7g0659 1015 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 1009 - -
Vra7g0659 1015 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 245 306 IPR000408 -
Vra7g0659 1015 SMART fyve_4 629 700 IPR000306 GO:0046872
Vra7g0659 1015 MobiDBLite consensus disorder prediction 748 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0659 Vra-Chr7 12737835 12754431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0659 954 1012 Major Intrinsic Protein MIP AT1G31880 49.153 1.37e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0659 - - pvu:PHAVU_003G066900g 1532.69