Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra7g0651 | ATGGCTTTCTTCCCAGCAAATTTCATGCTACAAACACCTCACCAAGAAGACCATCAACCTCCACCTTCACTCAACTCAATTATTACTTCATGTGCACCTCAAGAGTACCATGGAGGAGCATCCTTTCTAGGCAAGAGATCTATGTCATTTTCGGGGATTGAACTTGGAGAAGAGGCTAATGCCGAGGAGGACTTATCTGATGACGGATCACAAGCAGGAGAGAAGAAAAGGAGGCTTAACATGGAACAGGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGAAACAAGCTTGAACCTGAGAGGAAAATGCAGCTGGCAAGGGCTCTTGGCTTGCAGCCTAGACAGATTGCTATATGGTTCCAGAACAGGAGAGCTAGGTGGAAGACCAAGCAGTTGGAGAAGGACTACGATCTTCTCAAAAGACAATATGAAGCTATCAAGGCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGACCGAGATATTGGCACTGAAAAGCAGAGAACCCACCGAATCCATCAACCTCAATAAAGAAACTGAGGGCTCCAGCAGCAATAGAAGTGAGAACAGCTCAGAAATCAAGTTGGATATCTCAAGAACCCCAGCTATTGACAGTCCTCTATCCACTCAGCAGAACAGCAGAAACCTCTTTCCATCTTCTACTAGACCAACAGGAGTTGCTCAGCTTTTCCAAACCGCTTCAAGGCCAGAACTTCAGTGCCAAAAGATTGATCATATGGTCAAAGAAGAGAGCTTAAGCAACATGTTCTGTGGCATTGATGATCAATCTGGCCTTTGGCCATGGTTGGAGCAGCAGCATTTCAATTGA | 837 | 0.4504 | MAFFPANFMLQTPHQEDHQPPPSLNSIITSCAPQEYHGGASFLGKRSMSFSGIELGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAIKADNDALQAQNQKLQTEILALKSREPTESINLNKETEGSSSNRSENSSEIKLDISRTPAIDSPLSTQQNSRNLFPSSTRPTGVAQLFQTASRPELQCQKIDHMVKEESLSNMFCGIDDQSGLWPWLEQQHFN* | 279 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra7g0651 | 278 | Pfam | Homeodomain | 75 | 128 | IPR001356 | GO:0003677 | |
| Vra7g0651 | 278 | MobiDBLite | consensus disorder prediction | 175 | 225 | - | - | |
| Vra7g0651 | 278 | MobiDBLite | consensus disorder prediction | 178 | 225 | - | - | |
| Vra7g0651 | 278 | PRINTS | Lambda-repressor HTH signature | 101 | 110 | IPR000047 | GO:0003677 | |
| Vra7g0651 | 278 | PRINTS | Lambda-repressor HTH signature | 110 | 126 | IPR000047 | GO:0003677 | |
| Vra7g0651 | 278 | ProSiteProfiles | 'Homeobox' domain profile. | 70 | 130 | IPR001356 | GO:0003677 | |
| Vra7g0651 | 278 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-13 | 1 | 278 | - | - | |
| Vra7g0651 | 278 | ProSitePatterns | 'Homeobox' domain signature. | 105 | 128 | IPR017970 | GO:0000981|GO:0006355 | |
| Vra7g0651 | 278 | CDD | homeodomain | 75 | 131 | IPR001356 | GO:0003677 | |
| Vra7g0651 | 278 | MobiDBLite | consensus disorder prediction | 12 | 26 | - | - | |
| Vra7g0651 | 278 | Gene3D | - | 67 | 136 | - | - | |
| Vra7g0651 | 278 | SUPERFAMILY | Homeodomain-like | 68 | 132 | IPR009057 | - | |
| Vra7g0651 | 278 | SMART | HOX_1 | 73 | 134 | IPR001356 | GO:0003677 | |
| Vra7g0651 | 278 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Vra7g0651 | 278 | Pfam | Homeobox associated leucine zipper | 130 | 170 | IPR003106 | GO:0006355|GO:0043565 | |
| Vra7g0651 | 278 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 1 | 278 | IPR045224 | GO:0003700 | |
| Vra7g0651 | 278 | Coils | Coil | 122 | 170 | - | - | |
| Vra7g0651 | 278 | MobiDBLite | consensus disorder prediction | 58 | 77 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra7g0651 | Vra-Chr7 | 12336713 | 12339379 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra7g0651 | 1 | 278 | Homeobox Transcription Factor Family | AT1G69780 | 63.051 | 5.57e-117 | 336 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | HB-HD-ZIP | Vra7g0651 | Homeodomain | 1.4e-15 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra7g0651 | K09338 | - | gmx:100801479 | 536.184 |