Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0649 ATGATGCCGCAAGATTTGAAGCAGCACCATAATGAAGAGTCCACGAAGAAGGAGCACAGTGAAGAATCTAAAAAGAAGGAACACAATGAGGAATCTAAAAAGAAGGAGCGTCACATTGTGACTTGGACTCAAGAGGAGGATGATATACTAAGGGAGCAGATTGGTATTCATGGAACTGAAAATTGGGCAATTATTGCATCTAAGTTTAAAGATAAAACGACAAGACAGTGCAGAAGAAGATGGTACACATACTTGAATTCTGATTTCAAGAAAGGTGGATGGTCAGCTGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGTAACAGATGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCCGTGAAAAACCGTTTCTCGACACTCTGCAGAAAGAAAGAAAAATATGCAGCATTAGCAAAAGAAAACAGTACTTCATACATCAATTCAAATAGCAAGAGAATTATGTTCCAACATTATAATAATATGGATGCAACAGTTGAATCTGGAGTACCTATTAAAAAGATGAGGAGGGCCCATATCCCTGATGATGCAGAAAAGAGCGAATTTGGAGACCGATCACATTTACGTAATGGAACTCCAATAAATCAACAGCAAAGAGCACCATTTGCAGTATTAGCTCAAAACTCTCATAACTCAAACAACTTGCCAAACCCGCAGCATGATTGCAATCCCAAGTTTGATTCTGCCCAGGATGACCAGATTCAAGGAACATTTCTCAAAAGGGATGACCCAAAGAGAAGTGTATTGATGGAACAGGCAGAGTTATTAAGTTCACTAGCTCTAAAAGTTGATACCGAAAACGTGGACCAAAGTCTTGAACACACTTGGAAGGTTCTTCAAGAGTTTCTGAACCGAAACAAAGAACCAAACATCCCTGGTCACAAGATTTCAGATTTACGGCTTGTAGATAAAGATATCAATAAGGACTTGAAAAGCAGTAATGAGGAAGGCCAGGCTTGTTGGAGGCAAGTGGAACAATACGAAGATTCTCCAGCCAGTTCCGGGTACAGTACAGAATCAACTTTCCTGGGTCAGTCAGCCGTTGATAATTCAGAGCACACATTGCATCAAGATATTGAAACTGAAATGAAGTCTGAACAAGTTGGAGATGAAAAAGGAGTAGGCAGAGATGATAAAGGGGTTCTTTGTAATGCAAATGTAGATCAAGATGTACTGCCATATTGTGAGGAACAGATAAACAATGATGGAATTGTTTCTACCTCATCAAGATTGGAGTTCAACTCCCCTATTCAAGTAACCCCTCTGTTCAGATCCTTGGCAGCAGGAATTCCCAGCCCACAGTTTTCAGAAAGTGAAAGGAACTTCCTAAGGAAAACACTAGGAGTGGAATCTCCTTCCATCAACACAAGTGCTGACTCATCTCAACCACCACCCTGCAAAAGAGCCCTACTACCAAGTCTATGA 1467 0.4056 MMPQDLKQHHNEESTKKEHSEESKKKEHNEESKKKERHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSAEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCRKKEKYAALAKENSTSYINSNSKRIMFQHYNNMDATVESGVPIKKMRRAHIPDDAEKSEFGDRSHLRNGTPINQQQRAPFAVLAQNSHNSNNLPNPQHDCNPKFDSAQDDQIQGTFLKRDDPKRSVLMEQAELLSSLALKVDTENVDQSLEHTWKVLQEFLNRNKEPNIPGHKISDLRLVDKDINKDLKSSNEEGQACWRQVEQYEDSPASSGYSTESTFLGQSAVDNSEHTLHQDIETEMKSEQVGDEKGVGRDDKGVLCNANVDQDVLPYCEEQINNDGIVSTSSRLEFNSPIQVTPLFRSLAAGIPSPQFSESERNFLRKTLGVESPSINTSADSSQPPPCKRALLPSL* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0649 488 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 90 140 IPR017930 -
Vra7g0649 488 ProSiteProfiles Myb-like domain profile. 86 136 IPR001005 -
Vra7g0649 488 MobiDBLite consensus disorder prediction 1 37 - -
Vra7g0649 488 ProSiteProfiles Myb-like domain profile. 42 85 IPR001005 -
Vra7g0649 488 SUPERFAMILY Homeodomain-like 38 132 IPR009057 -
Vra7g0649 488 SMART sant 38 87 IPR001005 -
Vra7g0649 488 SMART sant 90 138 IPR001005 -
Vra7g0649 488 PANTHER MYB PROTEIN-RELATED 22 485 - -
Vra7g0649 488 Pfam Myb-like DNA-binding domain 42 102 - -
Vra7g0649 488 Gene3D - 29 90 - -
Vra7g0649 488 CDD SANT 41 85 IPR001005 -
Vra7g0649 488 MobiDBLite consensus disorder prediction 185 200 - -
Vra7g0649 488 Gene3D - 93 164 - -
Vra7g0649 488 PANTHER TRANSCRIPTION FACTOR MYB88 22 485 - -
Vra7g0649 488 MobiDBLite consensus disorder prediction 185 209 - -
Vra7g0649 488 CDD SANT 94 135 IPR001005 -
Vra7g0649 488 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 89 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0649 Vra-Chr7 12245978 12251894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0649 28 336 MYB Transcription Factor Family AT2G02820 58.280 1.18e-125 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra7g0649 Myb_DNA-bind_6 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0649 K09422 - gmx:100807667 666.766