Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0648 ATGGGTAACTGTCTAGCTTCTTCGGCTAAAGTAGAAGCAGCTCACAGTTCCAGAACCCCTTCTCGAGTTTCGAAGACCAGTCCTTCATCTGTTCCTTCCAACTTATCTATTCAGTCATACTGCGAAGCAAGTGATGTCTCAAGTCTCCCCACACCAAGGTCCGAGGGTGAAATCTTGTCTTCCCCAAATCTTAAGGCCTTTGCCTTTAATGAGCTAAAGAATGCCACCAGAAACTTTCGCCCCGACAGTCTTCTTGGGGAAGGAGGATTTGGTTGTGTTTACAAGGGCTGGATTGATGAACACACATTTACAGCTTCAAAACCTGGATCAGGAATGGTAGTTGCTGTTAAGAAACTCAAGCCTGAAGGGTTACAAGGTCATAAGGAGTGGTTGACTGAAGTGGACTACCTTGGGCAACTTCACCATCAGAATCTTGTTAAATTGATTGGATACTGCGTGGAGGGAGAGAACCGGCTGTTGGTCTATGAGTTTATGTCCAAAGGGAGCTTAGAGAATCATCTATTTAGAAGGGGACCACAACCTCTATCTTGGTCAGTGAGAATGAAAGTGGCCATTGGTGCTGCCAGAGGACTCTCTTTTCTTCATAATGCCCAGTCTCAAGTCATATACCGTGATTTTAAAGCATCTAATATCCTACTTGACGCTGATTTCAATCCTAAACTCTCTGATTTTGGTTTAGCAAAGGCTGGCCCTACGGGTGATAGAACTCATGTATCTACTCAAGTTATGGGAACTCAAGGATATGCAGCACCTGAATATGTTGCAACAGGTCGGCTGACGGCTAAAAGTGATGTATACAGCTTTGGTGTTGTGTTGCTTGAGTTATTGTCTGGTAGACGTGCAGTTGACAGAACAAAAGCTGGTGTGGAACAGAATCTAGTAGAGTGGACAAAACCATATTTGGGTGACAAAAGAAAACTCTTTCGGATTATGGACACCAAGTTGGGAGGCCAATACCCACAAAAAGGAGCTTACATGGCTGCCACTCTTGCGCTACAATGCCTAAATCGCGAAGCCAAGGCAAGACCTCCAATGACAGAGGTTTTAGAAACTCTTGAGCAGATTGCAGCCTCAAAAACTGCAGGGAGAAACAACCAATCGGAACAGAAGAGAGTCCATATTCCTGCAAGAAAGTGTAAAGTGCAAATGGGTGGTGCCCTTTGA 1185 0.4473 MGNCLASSAKVEAAHSSRTPSRVSKTSPSSVPSNLSIQSYCEASDVSSLPTPRSEGEILSSPNLKAFAFNELKNATRNFRPDSLLGEGGFGCVYKGWIDEHTFTASKPGSGMVVAVKKLKPEGLQGHKEWLTEVDYLGQLHHQNLVKLIGYCVEGENRLLVYEFMSKGSLENHLFRRGPQPLSWSVRMKVAIGAARGLSFLHNAQSQVIYRDFKASNILLDADFNPKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDRTKAGVEQNLVEWTKPYLGDKRKLFRIMDTKLGGQYPQKGAYMAATLALQCLNREAKARPPMTEVLETLEQIAASKTAGRNNQSEQKRVHIPARKCKVQMGGAL* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0648 394 CDD STKc_IRAK 85 362 - -
Vra7g0648 394 Gene3D Transferase(Phosphotransferase) domain 1 165 388 - -
Vra7g0648 394 Gene3D Phosphorylase Kinase; domain 1 55 164 - -
Vra7g0648 394 PANTHER OS01G0588500 PROTEIN-RELATED 10 371 - -
Vra7g0648 394 ProSiteProfiles Protein kinase domain profile. 79 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra7g0648 394 SUPERFAMILY Protein kinase-like (PK-like) 53 359 IPR011009 -
Vra7g0648 394 MobiDBLite consensus disorder prediction 10 34 - -
Vra7g0648 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vra7g0648 394 Pfam Protein tyrosine and serine/threonine kinase 83 359 IPR001245 GO:0004672|GO:0006468
Vra7g0648 394 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 10 371 - -
Vra7g0648 394 ProSitePatterns Protein kinases ATP-binding region signature. 85 118 IPR017441 GO:0005524
Vra7g0648 394 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0648 Vra-Chr7 12229213 12231999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0648 55 359 Glycoside Hydrolase AT3G07070 52.597 2.48e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra7g0648 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0648 - - gmx:100305401 728.013