Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0647 ATGTCCACATCCACCAACGTCGTCGTTCTAGACAACGGCGGTGGGTTAATCAAGGCGGGCCTGGGCGGCGAACGCGACCCCTCCGCTGTGGTCCCGAACTGTCTCTACCGTCCCCCGGCCTCTAAGAAATGGCTCCACCTGACCTCCGGCGACGAGGACCTGACGTCCGCCGCTGTGCGCCGCCCCATGGACAGAGGATACCTGATAAACCCGGAGCTACAGCGCGAAATCTGGTCGCACCTTTTCAACTCCGTCCTCCGTATAACGCCCTCGCAGTCCTCGCTCCTCCTCACGGAACCCCTCTTCACGCTCCCCTCCATCCAACGCTCCGTCGACGAGCTTGTCTTCGAGGAGTTCAACTTCCGGGCCCTCTACGTGGCCCATCCTCCCGCCCTAGTCCACCTCCGCGAGGCCACCCGCCGGCCCAGTGGGCTTCTCTCCCGGGCCCAGTGCAGTCTCGTCGTGGATGCAGGGTTCTCCTTCACCCACGCTTCCCCCGTCTTCCACAACTTCCCACTCAATTATGCCGTGAGGAGGATTGACTTGGGCGGCAAGGCCCTCACCAACTACCTCAAGGAACTCGTCTCCTTCCGCTCCGTCAACGTCATGGAAGAGACCTTCATCATCGACGACGTCAAGGAGAAGCTCTGCTTCGTCTCCCTCGACGTCGATCGCGATCTCTCCATCGCCAGGAAGAGTGGGAAAGAGAATCTGTTCAGGTGCACCTACGTGCTTCCGGATGGTGTCACACACACAAAGGGGTTTGTTAAGTACCCAGACCAGGCACGGCGGTATCTTGCATTGAGGGAGAGCAGCCTTCCTTCTTCGCTGCCAGTGGAAGCAGACGGGGTTATGAATTCCTCGGAAATTGCCGAGCAGCCAGAGGACAGAAAAAGAGTTGATTTGTCAAAAAATGAGTTTGACTTGACCAATGAGCGGTTTCTTGTGCCAGAGATGATCTTCCGTCCTGCTGATTTGGGAATGAACCAAGCTGGGCTAGCAGAATGCATTGTGCGGGCTGTTAATGCGTGCCACCCGCATCTCCATCCTGTACTCTACGAAAGCATCATATTAACTGGTGGAAGCACCTTATTTCCTCAGTTTGCTGAGAGATTAGAGAGGGAACTTCGACCTCTAGTTCCTGATGACTATAATGTGGAGATAACAACTCAAGAAGATCCCATACTAGGAGTTTGGCGTGGAGGGTCACTGTTGGCATCAAGTCCAGATTTTGAAGCAATGTGTGTGACGAAGTCTGAGTATGAGGAACTTGGTTCTGCTAGATGTCGCAAAAGATTCTTTCATTAA 1308 0.5497 MSTSTNVVVLDNGGGLIKAGLGGERDPSAVVPNCLYRPPASKKWLHLTSGDEDLTSAAVRRPMDRGYLINPELQREIWSHLFNSVLRITPSQSSLLLTEPLFTLPSIQRSVDELVFEEFNFRALYVAHPPALVHLREATRRPSGLLSRAQCSLVVDAGFSFTHASPVFHNFPLNYAVRRIDLGGKALTNYLKELVSFRSVNVMEETFIIDDVKEKLCFVSLDVDRDLSIARKSGKENLFRCTYVLPDGVTHTKGFVKYPDQARRYLALRESSLPSSLPVEADGVMNSSEIAEQPEDRKRVDLSKNEFDLTNERFLVPEMIFRPADLGMNQAGLAECIVRAVNACHPHLHPVLYESIILTGGSTLFPQFAERLERELRPLVPDDYNVEITTQEDPILGVWRGGSLLASSPDFEAMCVTKSEYEELGSARCRKRFFH* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0647 435 Pfam Actin 4 434 IPR004000 -
Vra7g0647 435 SUPERFAMILY Actin-like ATPase domain 150 434 IPR043129 -
Vra7g0647 435 PANTHER ACTIN 8 431 IPR004000 -
Vra7g0647 435 Gene3D - 4 161 - -
Vra7g0647 435 CDD NBD_sugar-kinase_HSP70_actin 8 194 - -
Vra7g0647 435 Gene3D Actin; Chain A, domain 4 188 258 - -
Vra7g0647 435 Gene3D - 300 405 - -
Vra7g0647 435 PANTHER ACTIN-RELATED PROTEIN 6 8 431 IPR030054 GO:0005634|GO:0006338
Vra7g0647 435 SUPERFAMILY Actin-like ATPase domain 4 134 IPR043129 -
Vra7g0647 435 SMART actin_3 5 434 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0647 Vra-Chr7 12223009 12226009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0647 8 434 Cytoskeleton Gene Families AT5G09810 27.460 9.87e-50 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0647 K11662 - gmx:100819827 783.482