Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0638 ATGTCCAACTTGCAGTTTCAACTGCACTCTCAGCCATCAACCTTGTCATCTTTGTCTTCATTATCGTCTTCTTCTCTTAAGTTATTAGCAAACCACTCTTTCTCCCCAAAGTCTCTTCCTCATAACCCTCCTAAACCCTTCTCCCTCAGATGTCGCCACTCTGACCTCTTCGACCAGAACACCTTAGCTTCCTCACAACGACCCACAAGACCCACTGCTTCAGTTGGAGCTTTGCCGCCTAGGGTTTATGTTGGTTACTCCATTTACAAAGGGAAGGCTGCGCTTACTTTGACTCCTAGGCCACCGGAATTCGTGCCGCTCGATTCAGGGGCATATAAAATATCCAAGGAAGGTTATGTGCTGCTTCAGTTTGCACCTGCGGTTGGTACGCGCCAATATGATTGGAATAGGAAGCAGGTGTTTTCCTTATCGGTGGGTGAAATGGGAAGTGTAATAAGCCTTGGTACAAGGGAGTCCTGTGAATTTTTTCATGATCCTTTTAAGGGCAAAAGCGATGAAGGTAAAGTCAGAAAAATTTTGAAGTTGGAGCCTCTTCCAGATGGTTCTGGGCACTTCTTTAACCTAAGTGTTCAAAACAAGCTTGTAAACGTGGATGAAAACATCTATATCCCTATTACAAAAGCAGAGTTAGCAGTTTTGAGCTCAACTTTCAATTTTATCATGCCATACCTTCTTGGTTGGCATACCTTTGCAAACTCCATAAAGCCAGAGGACACTAGTGGAGTGAATAATGCCAACCCAAGATATGGAGGTGACTATGAATGGAACAGATAG 795 0.4403 MSNLQFQLHSQPSTLSSLSSLSSSSLKLLANHSFSPKSLPHNPPKPFSLRCRHSDLFDQNTLASSQRPTRPTASVGALPPRVYVGYSIYKGKAALTLTPRPPEFVPLDSGAYKISKEGYVLLQFAPAVGTRQYDWNRKQVFSLSVGEMGSVISLGTRESCEFFHDPFKGKSDEGKVRKILKLEPLPDGSGHFFNLSVQNKLVNVDENIYIPITKAELAVLSSTFNFIMPYLLGWHTFANSIKPEDTSGVNNANPRYGGDYEWNR* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0638 264 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY1, CHLOROPLASTIC 15 264 - -
Vra7g0638 264 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 15 264 IPR013742 GO:0003697|GO:0006355|GO:0006952
Vra7g0638 264 SUPERFAMILY ssDNA-binding transcriptional regulator domain 80 264 IPR009044 GO:0003677|GO:0006355
Vra7g0638 264 Gene3D Transcriptional Coactivator Pc4; Chain A 76 252 IPR009044 GO:0003677|GO:0006355
Vra7g0638 264 Pfam Whirly transcription factor 88 222 IPR013742 GO:0003697|GO:0006355|GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra7g0638 Vra-Chr7 12011130 12014315 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0638 8 264 Whirly Transcription Factor Family AT1G14410 64.981 1.44e-120 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Vra7g0638 Whirly 3.6e-60 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0638 - - gmx:100789252 444.891