Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra7g0637 ATGATTTCCAACCAAATCCACGTGTTTCGCTCTGCATTTCGCGTTCTCAGATATCCATGCACAAACTCACCAAACGCGCGTCCTTTGCTTTTGCTCCATCCTAACACAAACGCTTCCTTCTGCCCCCCACCAACCACCCTTTGTTCTTCACTCACTGATGACTCCTTTTCCACACCAAAACCAAACCAGTTGGACTACAATCCTCCAGAGGAACTTTTCGAGCTGGAGGTGGAGCTCAAACCAAGCAAGGGTAAGTCTCATGCACCAGAACCAAGGTCCTGGTTTGGTCCAAATGGACAGTATATCAGGGAGCTACCTTGTCCGAGTTGCCGAGCAAGGGGTTATACACCTTGTACAGAGTGTGGAATAGAAAGATCAAGGCCAGACTGTCCAAAATGTTATGGAAAGGGTATATTGACTTGCCACCAATGCTCTGGAGATCGTGTTATATGGGAGGAATCAATTGATGAAAAACCATGGGAGAGGGCCCATTCTATTTCCCCACTTAAAGTGAAGGAAGATGATGAAGTTGACAAATTAGACATAAAGCTAGATGTGAAGAAAAAATCCAAGCGTGTTTACCAATCACCACCTCCAGAAGTTGGATTGAAGATTAGTCGTTCATTAAAAAGTCTGAATGCCAAAACTGGTCTGTTTAGCAACCGAATGAAGATTATTCACCAGGATCCCAAGCTTCAGGCACAGCGTGTGGCTGCTATCAAGAAAGCCAAGGGAACTGTTGCAGCTAGGAGACACACTTCCAAAACTATGAAAGCTTTCTTTAGTGATCCAATAAACCGACAGAAAAGGAGCATGGCCATGAAGGGAGTAAAATTCTACTGCAAAAACTGTGGACGTGAAGGGCATAGGAGATACTACTGTCCAGAACTCAAGGATACCATGATTGATCGGCGATTCACGTGTAGGGTCTGTGGGGAAAAAGGTCACAACAGAAGAACATGTAGAATGATAAGGGTAAGCCATAGCAATGAGAGACTGATAAAACAGCATCAGTGTAGGGTCTGTGGGGAAAAGGGCCACAACAGAAGAACTTGTAGGACGTTAAGGATAAGCCTTAGAAAGGGGAGAGTGATAAAACACCGAAAGTGTAAAGTATGTCACCAATTCGGCCATAACCGCAGAACCTGTCCTGAAGTTGTTCCTAGTAAAAGAAACACGGTCTCTCGAAGGCAATACAAGTGTAGGTTGTGCAAGAAAAAGGGACATAACAGTAGGACATGTCCAAGTAAGACAGATGTTACTGAACAACCTCAAGATTAA 1281 0.4434 MISNQIHVFRSAFRVLRYPCTNSPNARPLLLLHPNTNASFCPPPTTLCSSLTDDSFSTPKPNQLDYNPPEELFELEVELKPSKGKSHAPEPRSWFGPNGQYIRELPCPSCRARGYTPCTECGIERSRPDCPKCYGKGILTCHQCSGDRVIWEESIDEKPWERAHSISPLKVKEDDEVDKLDIKLDVKKKSKRVYQSPPPEVGLKISRSLKSLNAKTGLFSNRMKIIHQDPKLQAQRVAAIKKAKGTVAARRHTSKTMKAFFSDPINRQKRSMAMKGVKFYCKNCGREGHRRYYCPELKDTMIDRRFTCRVCGEKGHNRRTCRMIRVSHSNERLIKQHQCRVCGEKGHNRRTCRTLRISLRKGRVIKHRKCKVCHQFGHNRRTCPEVVPSKRNTVSRRQYKCRLCKKKGHNSRTCPSKTDVTEQPQD* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra7g0637 426 Gene3D - 363 425 - -
Vra7g0637 426 SUPERFAMILY Retrovirus zinc finger-like domains 278 323 IPR036875 GO:0003676|GO:0008270
Vra7g0637 426 ProSiteProfiles Zinc finger CCHC-type profile. 339 353 IPR001878 GO:0003676|GO:0008270
Vra7g0637 426 SUPERFAMILY Retrovirus zinc finger-like domains 389 422 IPR036875 GO:0003676|GO:0008270
Vra7g0637 426 Gene3D - 275 325 - -
Vra7g0637 426 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 336 419 - -
Vra7g0637 426 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 47 356 - -
Vra7g0637 426 ProSiteProfiles Zinc finger CCHC-type profile. 281 296 IPR001878 GO:0003676|GO:0008270
Vra7g0637 426 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 47 356 - -
Vra7g0637 426 PANTHER ZINC FINGER CCHC DOMAIN CONTAINING PROTEIN 336 419 - -
Vra7g0637 426 SMART c2hcfinal6 400 416 IPR001878 GO:0003676|GO:0008270
Vra7g0637 426 SMART c2hcfinal6 280 296 IPR001878 GO:0003676|GO:0008270
Vra7g0637 426 SMART c2hcfinal6 338 354 IPR001878 GO:0003676|GO:0008270
Vra7g0637 426 SMART c2hcfinal6 307 323 IPR001878 GO:0003676|GO:0008270
Vra7g0637 426 SMART c2hcfinal6 369 385 IPR001878 GO:0003676|GO:0008270
Vra7g0637 426 ProSiteProfiles Zinc finger CCHC-type profile. 308 322 IPR001878 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra7g0637 13 384 C2H2 Transcription Factor Family AT5G20220 58.355 4.20e-149 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra7g0637 - - var:108323927 824.698